Information for 1-CAGWTAATTACAT (Motif 2)

G T A C C G T A A T C G C G A T A C G T C G T A C T G A A G C T A C G T C G T A A T G C C G T A C A G T
Reverse Opposite:
G C T A C G A T A T C G A C G T C G T A C T G A A G C T A C G T G T C A G C T A A T G C A C G T A C T G
p-value:1e-16
log p-value:-3.820e+01
Information Content per bp:1.798
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.46%
Number of Background Sequences with motif7.4
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets44.4 +/- 17.0bp
Average Position of motif in Background41.6 +/- 15.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0074.1_Hoxd1/Jaspar

Match Rank:1
Score:0.73
Offset:-2
Orientation:reverse strand
Alignment:--CAGWTAATTACAT--
NNNAGCTAATTAGCTTA
 A C G T A C G T G T A C C G T A A T C G C G A T A C G T C G T A C T G A A G C T A C G T C G T A A T G C C G T A C A G T A C G T A C G T
C G A T G T C A G T A C T G C A T C A G A G T C G A C T T G C A C G T A C G A T A C G T C T G A T C A G A G C T C G A T A G C T G C T A

PH0053.1_Hoxa6/Jaspar

Match Rank:2
Score:0.73
Offset:0
Orientation:forward strand
Alignment:CAGWTAATTACAT---
AAGGTAATTACCTAAT
 G T A C C G T A A T C G C G A T A C G T C G T A C T G A A G C T A C G T C G T A A T G C C G T A C A G T A C G T A C G T A C G T
T C G A G T C A C T A G C A T G G A C T G T C A G C T A C A G T C A G T C T G A T G A C G A T C G A C T G T C A C G T A C A G T

PH0154.1_Prrx1/Jaspar

Match Rank:3
Score:0.72
Offset:-2
Orientation:reverse strand
Alignment:--CAGWTAATTACAT--
ANNAGTTAATTAGTTAN
 A C G T A C G T G T A C C G T A A T C G C G A T A C G T C G T A C T G A A G C T A C G T C G T A A T G C C G T A C A G T A C G T A C G T
T C G A A T C G G A C T G T C A T C A G A G C T G A C T C T G A C T G A A G C T A C G T C T G A C T A G A G C T C A G T T G C A A T G C

Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer

Match Rank:4
Score:0.72
Offset:1
Orientation:forward strand
Alignment:CAGWTAATTACAT
-ADBTAATTAR--
 G T A C C G T A A T C G C G A T A C G T C G T A C T G A A G C T A C G T C G T A A T G C C G T A C A G T
A C G T C G T A C G T A A G C T G A C T T G C A G T C A A C G T A G C T C T G A T C A G A C G T A C G T

PH0045.1_Hoxa1/Jaspar

Match Rank:5
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--CAGWTAATTACAT-
CTGAGCTAATTACCGT
 A C G T A C G T G T A C C G T A A T C G C G A T A C G T C G T A C T G A A G C T A C G T C G T A A T G C C G T A C A G T A C G T
A G T C G A C T C T A G C T G A T C A G A T G C G A C T T G C A C G T A C G A T A C G T C T G A T G A C A G T C A C T G A G C T

MEOX1/MA0661.1/Jaspar

Match Rank:6
Score:0.71
Offset:2
Orientation:reverse strand
Alignment:CAGWTAATTACAT
--GNTAATTAGN-
 G T A C C G T A A T C G C G A T A C G T C G T A C T G A A G C T A C G T C G T A A T G C C G T A C A G T
A C G T A C G T A T C G C A G T G A C T T G C A C T G A G C A T A C G T C T G A A T C G A G T C A C G T

PB0031.1_Hoxa3_1/Jaspar

Match Rank:7
Score:0.71
Offset:2
Orientation:reverse strand
Alignment:CAGWTAATTACAT---
--GTTAATTANCTCNN
 G T A C C G T A A T C G C G A T A C G T C G T A C T G A A G C T A C G T C G T A A T G C C G T A C A G T A C G T A C G T A C G T
A C G T A C G T T C A G A G C T A G C T G T C A C G T A A C G T A C G T C T G A T A G C G A T C C G A T T A G C T G A C G C T A

MEOX2/MA0706.1/Jaspar

Match Rank:8
Score:0.71
Offset:2
Orientation:reverse strand
Alignment:CAGWTAATTACAT
--NTTAATTACN-
 G T A C C G T A A T C G C G A T A C G T C G T A C T G A A G C T A C G T C G T A A T G C C G T A C A G T
A C G T A C G T A C T G G C A T G A C T T C G A G T C A C A G T A C G T C T G A A T G C G A C T A C G T

PH0072.1_Hoxc8/Jaspar

Match Rank:9
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:CAGWTAATTACAT---
ACNNTAATTACNNCAN
 G T A C C G T A A T C G C G A T A C G T C G T A C T G A A G C T A C G T C G T A A T G C C G T A C A G T A C G T A C G T A C G T
T G C A G T A C C T A G C A G T G A C T G T C A G C T A C A G T C A G T C T G A G T A C A G T C G A T C G T A C C G T A T G C A

PH0020.1_Dlx1/Jaspar

Match Rank:10
Score:0.71
Offset:2
Orientation:reverse strand
Alignment:CAGWTAATTACAT---
--ATTAATTANCTCAN
 G T A C C G T A A T C G C G A T A C G T C G T A C T G A A G C T A C G T C G T A A T G C C G T A C A G T A C G T A C G T A C G T
A C G T A C G T T C G A G A C T G A C T T C G A C G T A C G A T A C G T C T G A G A T C G A T C A C G T A G T C C T G A T A C G