Information for 1-GGHMATAAAA (Motif 1)

C T A G T A C G G A T C T G C A C T G A A C G T C T G A C G T A C G T A C T G A
Reverse Opposite:
G A C T A C G T A C G T A G C T G T C A A G C T A C G T C T A G A T G C G A T C
p-value:1e-19
log p-value:-4.445e+01
Information Content per bp:1.619
Number of Target Sequences with motif105.0
Percentage of Target Sequences with motif15.37%
Number of Background Sequences with motif2700.4
Percentage of Background Sequences with motif5.70%
Average Position of motif in Targets51.1 +/- 25.6bp
Average Position of motif in Background49.7 +/- 28.5bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:1
Score:0.94
Offset:0
Orientation:forward strand
Alignment:GGHMATAAAA--
NGYCATAAAWCH
 C T A G T A C G G A T C T G C A C T G A A C G T C T G A C G T A C G T A C T G A A C G T A C G T
T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A

CDX1/MA0878.1/Jaspar

Match Rank:2
Score:0.93
Offset:1
Orientation:forward strand
Alignment:GGHMATAAAA
-GCAATAAAA
 C T A G T A C G G A T C T G C A C T G A A C G T C T G A C G T A C G T A C T G A
A C G T T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A

CDX2/MA0465.1/Jaspar

Match Rank:3
Score:0.92
Offset:-1
Orientation:forward strand
Alignment:-GGHMATAAAA
AAGCCATAAAA
 A C G T C T A G T A C G G A T C T G C A C T G A A C G T C T G A C G T A C G T A C T G A
T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:4
Score:0.92
Offset:1
Orientation:forward strand
Alignment:GGHMATAAAA-
-GTCATAAAAN
 C T A G T A C G G A T C T G C A C T G A A C G T C T G A C G T A C G T A C T G A A C G T
A C G T T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T

HOXA10/MA0899.1/Jaspar

Match Rank:5
Score:0.91
Offset:0
Orientation:forward strand
Alignment:GGHMATAAAA-
GGTAATAAAAA
 C T A G T A C G G A T C T G C A C T G A A C G T C T G A C G T A C G T A C T G A A C G T
C T A G T C A G G A C T T G C A T C G A G C A T C G T A C G T A G T C A G T C A G T C A

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:6
Score:0.90
Offset:0
Orientation:forward strand
Alignment:GGHMATAAAA
NCYAATAAAA
 C T A G T A C G G A T C T G C A C T G A A C G T C T G A C G T A C G T A C T G A
C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A

HOXD13/MA0909.1/Jaspar

Match Rank:7
Score:0.89
Offset:1
Orientation:forward strand
Alignment:GGHMATAAAA-
-CCAATAAAAA
 C T A G T A C G G A T C T G C A C T G A A C G T C T G A C G T A C G T A C T G A A C G T
A C G T A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A

PH0013.1_Cdx2/Jaspar

Match Rank:8
Score:0.88
Offset:-3
Orientation:forward strand
Alignment:---GGHMATAAAA---
AAAGGTAATAAAATTT
 A C G T A C G T A C G T C T A G T A C G G A T C T G C A C T G A A C G T C T G A C G T A C G T A C T G A A C G T A C G T A C G T
C G T A T C G A T A C G C T A G T C A G A G C T G T C A C T G A C G A T C G T A C G T A G C T A G C T A G A C T C A G T G A C T

HOXA13/MA0650.1/Jaspar

Match Rank:9
Score:0.88
Offset:1
Orientation:forward strand
Alignment:GGHMATAAAA-
-CCAATAAAAA
 C T A G T A C G G A T C T G C A C T G A A C G T C T G A C G T A C G T A C T G A A C G T
A C G T T A G C A G T C G T C A C G T A A C G T G C T A C G T A G T C A T G C A G T C A

HOXB13/MA0901.1/Jaspar

Match Rank:10
Score:0.86
Offset:1
Orientation:forward strand
Alignment:GGHMATAAAA-
-CCAATAAAAC
 C T A G T A C G G A T C T G C A C T G A A C G T C T G A C G T A C G T A C T G A A C G T
A C G T T A G C G A T C G T C A C G T A A G C T C G T A C G T A G T C A G T C A G T A C