Information for 1-RATGACATCA (Motif 2)

T C A G G T C A A G C T C A T G C T G A G T A C T C G A A C G T T G A C C G T A
Reverse Opposite:
C G A T A C T G G T C A A G C T A C T G G A C T G T A C C T G A A C G T A G T C
p-value:1e-22
log p-value:-5.169e+01
Information Content per bp:1.669
Number of Target Sequences with motif57.0
Percentage of Target Sequences with motif6.65%
Number of Background Sequences with motif625.4
Percentage of Background Sequences with motif1.29%
Average Position of motif in Targets48.2 +/- 27.0bp
Average Position of motif in Background47.9 +/- 26.6bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

JUN/MA0488.1/Jaspar

Match Rank:1
Score:0.93
Offset:1
Orientation:reverse strand
Alignment:RATGACATCA----
-ATGACATCATCNN
 T C A G G T C A A G C T C A T G C T G A G T A C T C G A A C G T T G A C C G T A A C G T A C G T A C G T A C G T
A C G T T C G A A C G T A C T G C T G A A T G C T G C A C G A T G T A C C G T A A G C T G A T C G C A T G C A T

JUND(var.2)/MA0492.1/Jaspar

Match Rank:2
Score:0.90
Offset:0
Orientation:reverse strand
Alignment:RATGACATCA-----
NATGACATCATCNNN
 T C A G G T C A A G C T C A T G C T G A G T A C T C G A A C G T T G A C C G T A A C G T A C G T A C G T A C G T A C G T
A C T G T C G A A C G T A C T G C T G A A G T C T C G A A C G T G T A C C G T A A G C T A G T C G C A T G A C T G C A T

Creb5/MA0840.1/Jaspar

Match Rank:3
Score:0.88
Offset:0
Orientation:forward strand
Alignment:RATGACATCA--
AATGACGTCACC
 T C A G G T C A A G C T C A T G C T G A G T A C T C G A A C G T T G A C C G T A A C G T A C G T
T C G A T C G A G A C T C A T G C G T A A G T C C T A G G C A T G T A C C G T A A G T C G A T C

Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer

Match Rank:4
Score:0.88
Offset:-1
Orientation:forward strand
Alignment:-RATGACATCA-
NRRTGACGTCAT
 A C G T T C A G G T C A A G C T C A T G C T G A G T A C T C G A A C G T T G A C C G T A A C G T
A T G C T C A G T C G A G C A T A C T G C G T A A G T C T C A G G A C T T G A C C G T A A G C T

JDP2(var.2)/MA0656.1/Jaspar

Match Rank:5
Score:0.88
Offset:0
Orientation:forward strand
Alignment:RATGACATCA--
GATGACGTCATC
 T C A G G T C A A G C T C A T G C T G A G T A C T C G A A C G T T G A C C G T A A C G T A C G T
T A C G T C G A A G C T C A T G G T C A A G T C T C A G G A C T T G A C T G C A A G C T T G A C

Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer

Match Rank:6
Score:0.88
Offset:-1
Orientation:forward strand
Alignment:-RATGACATCA-
NGRTGACGTCAY
 A C G T T C A G G T C A A G C T C A T G C T G A G T A C T C G A A C G T T G A C C G T A A C G T
T A G C C T A G T C G A G A C T A C T G C T G A A G T C T C A G G C A T T G A C C T G A A G C T

JunD(bZIP)/K562-JunD-ChIP-Seq/Homer

Match Rank:7
Score:0.87
Offset:-1
Orientation:reverse strand
Alignment:-RATGACATCA-
NGATGACGTCAT
 A C G T T C A G G T C A A G C T C A T G C T G A G T A C T C G A A C G T T G A C C G T A A C G T
A G C T C T A G T C G A A C G T A C T G C T G A A G T C T C A G A G C T G T A C C G T A A G C T

Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.87
Offset:0
Orientation:forward strand
Alignment:RATGACATCA
GATGACGTCA
 T C A G G T C A A G C T C A T G C T G A G T A C T C G A A C G T T G A C C G T A
T A C G T C G A G A C T A C T G C T G A A G T C T C A G G A C T T G A C C T G A

c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.87
Offset:-1
Orientation:reverse strand
Alignment:-RATGACATCA-
NGATGACGTCAT
 A C G T T C A G G T C A A G C T C A T G C T G A G T A C T C G A A C G T T G A C C G T A A C G T
C T A G T C A G T C G A C G A T C A T G C T G A A G T C T C A G G A C T T G A C C G T A A G C T

ATF7/MA0834.1/Jaspar

Match Rank:10
Score:0.86
Offset:-1
Orientation:forward strand
Alignment:-RATGACATCA---
CGATGACGTCATCG
 A C G T T C A G G T C A A G C T C A T G C T G A G T A C T C G A A C G T T G A C C G T A A C G T A C G T A C G T
A G T C C T A G T C G A C A G T C A T G C T G A A G T C T C A G C A G T T G A C C T G A A G C T G T A C T C A G