Information for 8-TCTCTCACTAWTT (Motif 10)

A C G T A G T C A G C T T A G C G A C T A T G C C T G A A G T C A C G T C G T A G C T A A G C T G A C T
Reverse Opposite:
C G T A C T G A C G A T A C G T G T C A A C T G A G C T A T C G C T G A A C T G C T G A C T A G T G C A
p-value:1e-10
log p-value:-2.455e+01
Information Content per bp:1.726
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.17%
Number of Background Sequences with motif23.5
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets53.3 +/- 28.8bp
Average Position of motif in Background55.0 +/- 19.2bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0039.1_Mnx1/Jaspar

Match Rank:1
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:TCTCTCACTAWTT-----
--NNNCACTAATTANTNN
 A C G T A G T C A G C T T A G C G A C T A T G C C T G A A G T C A C G T C G T A G C T A A G C T G A C T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A T G C C T A G A T G C G A T C T G C A A T G C G A C T G T C A C G T A G A C T A C G T C T G A T A C G A C G T T G C A T G A C

PH0109.1_Nkx1-1/Jaspar

Match Rank:2
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:TCTCTCACTAWTT------
--NCCCACTAATTAGCGCA
 A C G T A G T C A G C T T A G C G A C T A T G C C T G A A G T C A C G T C G T A G C T A A G C T G A C T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A G C T G T A C A T G C G A T C T C G A A G T C G A C T G T C A C G T A C G A T A C G T C T G A T C A G A G T C A C T G A T G C G C T A

PH0034.1_Gbx2/Jaspar

Match Rank:3
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:TCTCTCACTAWTT------
--AANCGCTAATTAGCNNN
 A C G T A G T C A G C T T A G C G A C T A T G C C T G A A G T C A C G T C G T A G C T A A G C T G A C T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G T C A T G C A G A C T A T G C T C A G A T G C A G C T G T C A G C T A C A G T A C G T C T G A T A C G A G T C A C T G A T G C G C A T

PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:4
Score:0.59
Offset:0
Orientation:forward strand
Alignment:TCTCTCACTAWTT--
ACCGTGACTAATTNN
 A C G T A G T C A G C T T A G C G A C T A T G C C T G A A G T C A C G T C G T A G C T A A G C T G A C T A C G T A C G T
C G T A T A G C A G T C C T A G C A G T C T A G C T G A G T A C G C A T T C G A C G T A G C A T A G C T C T A G T C G A

PH0155.1_Prrx2/Jaspar

Match Rank:5
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:TCTCTCACTAWTT------
--NTTCGCTAATTAGCTNT
 A C G T A G T C A G C T T A G C G A C T A T G C C T G A A G T C A C G T C G T A G C T A A G C T G A C T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G A C T G C A T G A C T G T A C T C A G G A T C A G C T C T G A C G T A G A C T A G C T C T G A C T A G A G T C C A G T A C G T G C A T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--TCTCTCACTAWTT
TGTCTGDCACCT---
 A C G T A C G T A C G T A G T C A G C T T A G C G A C T A T G C C T G A A G T C A C G T C G T A G C T A A G C T G A C T
G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T A C G T A C G T A C G T

HOXA5/MA0158.1/Jaspar

Match Rank:7
Score:0.58
Offset:5
Orientation:forward strand
Alignment:TCTCTCACTAWTT
-----CACTAATT
 A C G T A G T C A G C T T A G C G A C T A T G C C T G A A G T C A C G T C G T A G C T A A G C T G A C T
A C G T A C G T A C G T A C G T A C G T G T A C C T G A A T G C C G A T C G T A C T G A A C G T A C G T

Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:8
Score:0.58
Offset:7
Orientation:reverse strand
Alignment:TCTCTCACTAWTT----
-------CTATTTTTGG
 A C G T A G T C A G C T T A G C G A C T A T G C C T G A A G T C A C G T C G T A G C T A A G C T G A C T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G C T G T C A C G A T C G A T A G C T G A C T G C A T C T G A C A T G

PH0032.1_Evx2/Jaspar

Match Rank:9
Score:0.58
Offset:2
Orientation:forward strand
Alignment:TCTCTCACTAWTT------
--CACCGCTAATTAGCGGT
 A C G T A G T C A G C T T A G C G A C T A T G C C T G A A G T C A C G T C G T A G C T A A G C T G A C T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A G T C T G C A G A T C G T A C T C A G A T G C A G C T T G C A C G T A A C G T A C G T C T G A A T C G A T G C A C T G A C G T G C A T

PH0033.1_Gbx1/Jaspar

Match Rank:10
Score:0.57
Offset:2
Orientation:forward strand
Alignment:TCTCTCACTAWTT------
--TGCCACTAATTAGTGTA
 A C G T A G T C A G C T T A G C G A C T A T G C C T G A A G T C A C G T C G T A G C T A A G C T G A C T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G C A T C T A G A T G C T G A C T C G A G T A C G A C T G T C A C T G A A G C T A C G T C T G A A C T G A C G T A C T G A C G T G C T A