Information for 4-CGTCTGGCGCCCC (Motif 6)

A G T C A C T G A C G T A T G C C G A T A C T G A C T G A G T C A T C G A G T C A G T C T A G C A G T C
Reverse Opposite:
C T A G A C T G A C T G A C T G A T G C C T A G A G T C G T A C C G T A A T C G T G C A G T A C C T A G
p-value:1e-11
log p-value:-2.569e+01
Information Content per bp:1.815
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.08%
Number of Background Sequences with motif10.7
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets46.0 +/- 23.4bp
Average Position of motif in Background49.2 +/- 22.6bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0113.1_E2F3_2/Jaspar

Match Rank:1
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-CGTCTGGCGCCCC---
NNNNTTGGCGCCGANNN
 A C G T A G T C A C T G A C G T A T G C C G A T A C T G A C T G A G T C A T C G A G T C A G T C T A G C A G T C A C G T A C G T A C G T
T A C G T A G C A C G T G A C T A C G T G C A T C T A G A T C G G T A C A C T G A T G C A G T C C T A G G C T A C T A G A T G C C A G T

PB0112.1_E2F2_2/Jaspar

Match Rank:2
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-CGTCTGGCGCCCC---
NNNNTTGGCGCCGANNN
 A C G T A G T C A C T G A C G T A T G C C G A T A C T G A C T G A G T C A T C G A G T C A G T C T A G C A G T C A C G T A C G T A C G T
T A G C T G A C A G C T A G C T C A G T G A C T C T A G A T C G G T A C A C T G T A G C G A T C C T A G G C T A T C G A A T C G C A T G

E2F1/MA0024.3/Jaspar

Match Rank:3
Score:0.64
Offset:2
Orientation:forward strand
Alignment:CGTCTGGCGCCCC-
--TTTGGCGCCAAA
 A G T C A C T G A C G T A T G C C G A T A C T G A C T G A G T C A T C G A G T C A G T C T A G C A G T C A C G T
A C G T A C G T G C A T C G A T C G A T T A C G A T C G A G T C A T C G T A G C A G T C G T C A G C T A C G T A

PB0052.1_Plagl1_1/Jaspar

Match Rank:4
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CGTCTGGCGCCCC---
TTGGGGGCGCCCCTAG
 A G T C A C T G A C G T A T G C C G A T A C T G A C T G A G T C A T C G A G T C A G T C T A G C A G T C A C G T A C G T A C G T
A C G T G A C T C T A G C T A G C A T G C T A G A C T G A T G C A T C G T G A C G A T C G T A C G A T C A C G T T C G A T A C G

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:CGTCTGGCGCCCC
TGTCTGDCACCT-
 A G T C A C T G A C G T A T G C C G A T A C T G A C T G A G T C A T C G A G T C A G T C T A G C A G T C
G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---CGTCTGGCGCCCC
VBSYGTCTGG------
 A C G T A C G T A C G T A G T C A C T G A C G T A T G C C G A T A C T G A C T G A G T C A T C G A G T C A G T C T A G C A G T C
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T A C G T A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-CGTCTGGCGCCCC
CTGTCTGG------
 A C G T A G T C A C T G A C G T A T G C C G A T A C T G A C T G A G T C A T C G A G T C A G T C T A G C A G T C
A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T A C G T A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:8
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-CGTCTGGCGCCCC
CTGTCTGTCACCT-
 A C G T A G T C A C T G A C G T A T G C C G A T A C T G A C T G A G T C A T C G A G T C A G T C T A G C A G T C
T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:9
Score:0.54
Offset:0
Orientation:forward strand
Alignment:CGTCTGGCGCCCC
GGTCTGGCAT---
 A G T C A C T G A C G T A T G C C G A T A C T G A C T G A G T C A T C G A G T C A G T C T A G C A G T C
A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T A C G T A C G T A C G T

POL006.1_BREu/Jaspar

Match Rank:10
Score:0.54
Offset:5
Orientation:reverse strand
Alignment:CGTCTGGCGCCCC
-----GGCGCGCT
 A G T C A C T G A C G T A T G C C G A T A C T G A C T G A G T C A T C G A G T C A G T C T A G C A G T C
A C G T A C G T A C G T A C G T A C G T C T A G T A C G A G T C A C T G A G T C A T C G A T G C A C G T