Information for 3-DCCGGCCAGACMCGGH (Motif 4)

C G T A A G T C A G T C A C T G A T C G A G T C A G T C G T C A A C T G G T C A A T G C G T C A G T A C A T C G A C T G G C T A
Reverse Opposite:
C A G T G T A C A T G C A C T G A C G T A T C G A C G T A G T C A C G T A C T G C T A G A T G C A G T C C T A G A C T G G A C T
p-value:1e-11
log p-value:-2.746e+01
Information Content per bp:1.767
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.81%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets49.7 +/- 21.4bp
Average Position of motif in Background57.2 +/- 14.1bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.61
Offset:5
Orientation:reverse strand
Alignment:DCCGGCCAGACMCGGH
-----CCAGACRSVB-
 C G T A A G T C A G T C A C T G A T C G A G T C A G T C G T C A A C T G G T C A A T G C G T C A G T A C A T C G A C T G G C T A
A C G T A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.61
Offset:5
Orientation:reverse strand
Alignment:DCCGGCCAGACMCGGH
-----CCAGACAG---
 C G T A A G T C A G T C A C T G A T C G A G T C A G T C G T C A A C T G G T C A A T G C G T C A G T A C A T C G A C T G G C T A
A C G T A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:3
Score:0.56
Offset:5
Orientation:reverse strand
Alignment:DCCGGCCAGACMCGGH
-----BCAGACWA---
 C G T A A G T C A G T C A C T G A T C G A G T C A G T C G T C A A C T G G T C A A T G C G T C A G T A C A T C G A C T G G C T A
A C G T A C G T A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T

Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-DCCGGCCAGACMCGGH---
AACCGGTTNNAACCGGTTTN
 A C G T C G T A A G T C A G T C A C T G A T C G A G T C A G T C G T C A A C T G G T C A A T G C G T C A G T A C A T C G A C T G G C T A A C G T A C G T A C G T
C T G A C T G A A T G C G A T C C T A G A T C G G A C T G A C T A G C T C T A G C T G A C T G A A T G C G A T C C T A G A T C G G A C T G A C T A G C T A C T G

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:5
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:DCCGGCCAGACMCGGH
--ATGCCAGACN----
 C G T A A G T C A G T C A C T G A T C G A G T C A G T C G T C A A C T G G T C A A T G C G T C A G T A C A T C G A C T G G C T A
A C G T A C G T C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T A C G T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:6
Score:0.53
Offset:0
Orientation:forward strand
Alignment:DCCGGCCAGACMCGGH-
CAAATCCAGACATCACA
 C G T A A G T C A G T C A C T G A T C G A G T C A G T C G T C A A C T G G T C A A T G C G T C A G T A C A T C G A C T G G C T A A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:7
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:DCCGGCCAGACMCGGH
--TGCCCAGNHW----
 C G T A A G T C A G T C A C T G A T C G A G T C A G T C G T C A A C T G G T C A A T G C G T C A G T A C A T C G A C T G G C T A
A C G T A C G T C G A T C A T G A G T C G A T C G T A C G C T A C T A G C A T G G A T C C G T A A C G T A C G T A C G T A C G T

SMAD3/MA0795.1/Jaspar

Match Rank:8
Score:0.52
Offset:2
Orientation:forward strand
Alignment:DCCGGCCAGACMCGGH
--CGTCTAGACA----
 C G T A A G T C A G T C A C T G A T C G A G T C A G T C G T C A A C T G G T C A A T G C G T C A G T A C A T C G A C T G G C T A
A C G T A C G T G A T C C T A G C G A T T A G C A G C T T G C A A T C G G T C A G A T C G C T A A C G T A C G T A C G T A C G T

EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer

Match Rank:9
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:DCCGGCCAGACMCGGH
---GGCCACACCCAN-
 C G T A A G T C A G T C A C T G A T C G A G T C A G T C G T C A A C T G G T C A A T G C G T C A G T A C A T C G A C T G G C T A
A C G T A C G T A C G T C T A G C T A G T G A C A G T C G T C A A G T C C T G A A G T C A G T C A G T C G C T A A C T G A C G T

Sp1(Zf)/Promoter/Homer

Match Rank:10
Score:0.51
Offset:2
Orientation:forward strand
Alignment:DCCGGCCAGACMCGGH
--GGCCCCGCCCCC--
 C G T A A G T C A G T C A C T G A T C G A G T C A G T C G T C A A C T G G T C A A T G C G T C A G T A C A T C G A C T G G C T A
A C G T A C G T T A C G C T A G A T G C G A T C G T A C A G T C C T A G A G T C A G T C A G T C G T A C A G T C A C G T A C G T