Information for 16-CATACACTCA (Motif 39)

A G T C C G T A A C G T C G T A A G T C C G T A A G T C A C G T A G T C C G T A
Reverse Opposite:
A C G T A C T G C G T A A C T G A C G T A C T G A C G T C G T A A C G T A C T G
p-value:1e-4
log p-value:-1.103e+01
Information Content per bp:1.530
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.40%
Number of Background Sequences with motif3.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets41.3 +/- 26.0bp
Average Position of motif in Background70.1 +/- 21.5bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:1
Score:0.70
Offset:1
Orientation:forward strand
Alignment:CATACACTCA--
-AGCCACTCAAG
 A G T C C G T A A C G T C G T A A G T C C G T A A G T C A C G T A G T C C G T A A C G T A C G T
A C G T C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G

PB0130.1_Gm397_2/Jaspar

Match Rank:2
Score:0.67
Offset:-5
Orientation:forward strand
Alignment:-----CATACACTCA-
AGCGGCACACACGCAA
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C G T C G T A A G T C C G T A A G T C A C G T A G T C C G T A A C G T
C T G A T C A G G T A C T C A G C T A G T G A C C T G A G A T C T C G A A T G C T G C A G T A C A C T G G A T C T G C A G T C A

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:3
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:CATACACTCA-
-MRSCACTYAA
 A G T C C G T A A C G T C G T A A G T C C G T A A G T C A C G T A G T C C G T A A C G T
A C G T G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A

PB0028.1_Hbp1_1/Jaspar

Match Rank:4
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--CATACACTCA----
NNCATTCATTCATNNN
 A C G T A C G T A G T C C G T A A C G T C G T A A G T C C G T A A G T C A C G T A G T C C G T A A C G T A C G T A C G T A C G T
T C G A G A C T G T A C C G T A A G C T G A C T T G A C C G T A C G A T G C A T A T G C C G T A C G A T G C T A A C T G C G A T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:5
Score:0.65
Offset:1
Orientation:forward strand
Alignment:CATACACTCA-
-AASCACTCAA
 A G T C C G T A A C G T C G T A A G T C C G T A A G T C A C G T A G T C C G T A A C G T
A C G T C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:6
Score:0.61
Offset:1
Orientation:forward strand
Alignment:CATACACTCA-
-AAGCACTTAA
 A G T C C G T A A C G T C G T A A G T C C G T A A G T C A C G T A G T C C G T A A C G T
A C G T T C G A T C G A T A C G G A T C G T C A G T A C C G A T A G C T G T C A T G C A

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:7
Score:0.59
Offset:2
Orientation:forward strand
Alignment:CATACACTCA--
--RSCACTYRAG
 A G T C C G T A A C G T C G T A A G T C C G T A A G T C A C G T A G T C C G T A A C G T A C G T
A C G T A C G T C T A G T A C G A G T C C G T A A G T C A C G T A G T C T C G A C G T A T A C G

Dux/MA0611.1/Jaspar

Match Rank:8
Score:0.58
Offset:3
Orientation:forward strand
Alignment:CATACACTCA-
---CCAATCAA
 A G T C C G T A A C G T C G T A A G T C C G T A A G T C A C G T A G T C C G T A A C G T
A C G T A C G T A C G T A T G C A G T C C G T A C G T A A C G T A G T C C G T A C G T A

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:9
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:CATACACTCA--
--NSCACTYVAV
 A G T C C G T A A C G T C G T A A G T C C G T A A G T C A C G T A G T C C G T A A C G T A C G T
A C G T A C G T C T A G T A G C A G T C G C T A G A T C A C G T G A T C T C G A C T G A T A C G

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:10
Score:0.57
Offset:-5
Orientation:reverse strand
Alignment:-----CATACACTCA
ATTTGCATACAATGG
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C G T C G T A A G T C C G T A A G T C A C G T A G T C C G T A
G T C A A G C T G A C T C G A T T C A G T G A C C G T A G A C T C G T A A T G C C G T A C G T A C G A T C T A G T C A G