Information for 19-YTGWCWTSWCASARTG (Motif 35)

A G C T A C G T A C T G C G T A A G T C C G A T A C G T A T G C C G T A G T A C C G T A A T C G C G T A C T A G A C G T A C T G
Reverse Opposite:
A G T C C G T A A G T C A C G T A T G C A C G T A C T G C G A T A T C G C G T A C G T A A C T G C G A T A G T C C G T A T C A G
p-value:1e-6
log p-value:-1.431e+01
Information Content per bp:1.825
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.40%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets26.0 +/- 13.3bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nr2e1/MA0676.1/Jaspar

Match Rank:1
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:YTGWCWTSWCASARTG
TTGACTTTT-------
 A G C T A C G T A C T G C G T A A G T C C G A T A C G T A T G C C G T A G T A C C G T A A T C G C G T A C T A G A C G T A C T G
C G A T A C G T T C A G C T G A G A T C G A C T G A C T G A C T C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0168.1_Sox14_2/Jaspar

Match Rank:2
Score:0.56
Offset:5
Orientation:forward strand
Alignment:YTGWCWTSWCASARTG----
-----CTCACACAATGGCGC
 A G C T A C G T A C T G C G T A A G T C C G A T A C G T A T G C C G T A G T A C C G T A A T C G C G T A C T A G A C G T A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A G T C A C G T A G T C T C G A T A G C C G T A A T G C G T C A G T C A G C A T C T A G T C A G G T A C A C T G A T G C

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:3
Score:0.55
Offset:0
Orientation:forward strand
Alignment:YTGWCWTSWCASARTG
YTGWCADY--------
 A G C T A C G T A C T G C G T A A G T C C G A T A C G T A T G C C G T A G T A C C G T A A T C G C G T A C T A G A C G T A C T G
G A C T G C A T C T A G C G A T G A T C T C G A C A T G G A T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

CRE(bZIP)/Promoter/Homer

Match Rank:4
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--YTGWCWTSWCASARTG
CGGTGACGTCAC------
 A C G T A C G T A G C T A C G T A C T G C G T A A G T C C G A T A C G T A T G C C G T A G T A C C G T A A T C G C G T A C T A G A C G T A C T G
A T G C A T C G T A C G A G C T A T C G C T G A A G T C C T A G A G C T A T G C C T G A A T G C A C G T A C G T A C G T A C G T A C G T A C G T

CREB3/MA0638.1/Jaspar

Match Rank:5
Score:0.52
Offset:-2
Orientation:reverse strand
Alignment:--YTGWCWTSWCASARTG
NGATGACGTGGCAN----
 A C G T A C G T A G C T A C G T A C T G C G T A A G T C C G A T A C G T A T G C C G T A G T A C C G T A A T C G C G T A C T A G A C G T A C T G
A G C T C A T G T C G A G A C T A C T G C G T A G A T C A C T G C G A T A T C G C A T G G T A C T C G A A G T C A C G T A C G T A C G T A C G T

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:6
Score:0.52
Offset:1
Orientation:forward strand
Alignment:YTGWCWTSWCASARTG
-TGTCANYT-------
 A G C T A C G T A C T G C G T A A G T C C G A T A C G T A T G C C G T A G T A C C G T A A T C G C G T A C T A G A C G T A C T G
A C G T A G C T C A T G G C A T G A T C T G C A C T A G G A T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer

Match Rank:7
Score:0.52
Offset:5
Orientation:reverse strand
Alignment:YTGWCWTSWCASARTG
-----TTMACACCTT-
 A G C T A C G T A C T G C G T A A G T C C G A T A C G T A T G C C G T A G T A C C G T A A T C G C G T A C T A G A C G T A C T G
A C G T A C G T A C G T A C G T A C G T C A G T G A C T G T A C C T G A A T G C T C G A T A G C G T A C G A C T G A C T A C G T

Sox17/MA0078.1/Jaspar

Match Rank:8
Score:0.52
Offset:9
Orientation:reverse strand
Alignment:YTGWCWTSWCASARTG--
---------GACAATGNN
 A G C T A C G T A C T G C G T A A G T C C G A T A C G T A T G C C G T A G T A C C G T A A T C G C G T A C T A G A C G T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G G T C A A G T C C G T A C T G A C G A T C T A G C G T A C T A G

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:9
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:YTGWCWTSWCASARTG
-TGACCTYA-------
 A G C T A C G T A C T G C G T A A G T C C G A T A C G T A T G C C G T A G T A C C G T A A T C G C G T A C T A G A C G T A C T G
A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

XBP1/MA0844.1/Jaspar

Match Rank:10
Score:0.51
Offset:-1
Orientation:reverse strand
Alignment:-YTGWCWTSWCASARTG
GATGACGTGGCANT---
 A C G T A G C T A C G T A C T G C G T A A G T C C G A T A C G T A T G C C G T A G T A C C G T A A T C G C G T A C T A G A C G T A C T G
T C A G T G C A G A C T A C T G T C G A G A T C C T A G G A C T T C A G C A T G G T A C T G C A G A C T G C A T A C G T A C G T A C G T