Information for 20-MMAGAGWGAKGGA (Motif 32)

G T C A G T A C C G T A T A C G C G T A A C T G C G T A A C T G C G T A A C G T A C T G A C T G C G T A
Reverse Opposite:
A C G T A G T C A G T C G T C A A C G T A G T C C G A T A G T C A C G T A T G C A C G T A C T G A C G T
p-value:1e-6
log p-value:-1.435e+01
Information Content per bp:1.872
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.54%
Number of Background Sequences with motif4.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets38.8 +/- 26.2bp
Average Position of motif in Background39.5 +/- 18.7bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)2.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:1
Score:0.55
Offset:5
Orientation:reverse strand
Alignment:MMAGAGWGAKGGA----
-----ATGATKGATGRC
 G T C A G T A C C G T A T A C G C G T A A C T G C G T A A C T G C G T A A C G T A C T G A C T G C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T G A C G A T A T C G C G T A C G A T C A G T C T A G C G T A C G A T A C T G C T G A A T G C

ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:2
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-MMAGAGWGAKGGA------
SMCAGTCWGAKGGAGGAGGC
 A C G T G T C A G T A C C G T A T A C G C G T A A C T G C G T A A C T G C G T A A C G T A C T G A C T G C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A T C G T G A C A T G C C T G A T C A G G A C T A G T C C G A T T C A G T C G A C A T G C T A G C T A G C G T A C T A G C T A G C T G A C T A G C T A G A T G C

E2F6/MA0471.1/Jaspar

Match Rank:3
Score:0.54
Offset:5
Orientation:forward strand
Alignment:MMAGAGWGAKGGA---
-----GGGCGGGAAGG
 G T C A G T A C C G T A T A C G C G T A A C T G C G T A A C T G C G T A A C G T A C T G A C T G C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T A G T C A G A C T G G T A C C T A G A C T G T A C G C G T A C T G A T C A G T C A G

Gata1/MA0035.3/Jaspar

Match Rank:4
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:MMAGAGWGAKGGA
--ANAGATAAGAA
 G T C A G T A C C G T A T A C G C G T A A C T G C G T A A C T G C G T A A C G T A C T G A C T G C G T A
A C G T A C G T C T G A T A G C C G T A A C T G C G T A A C G T C G T A C T G A T C A G T C G A T C G A

PH0134.1_Pbx1/Jaspar

Match Rank:5
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-MMAGAGWGAKGGA---
NNNNNATTGATGNGTGN
 A C G T G T C A G T A C C G T A T A C G C G T A A C T G C G T A A C T G C G T A A C G T A C T G A C T G C G T A A C G T A C G T A C G T
A C G T A C T G G C A T C G A T C A G T G C T A C G A T A C G T A C T G C G T A G A C T A C T G C A T G C T A G G C A T T C A G C T G A

PRDM1/MA0508.1/Jaspar

Match Rank:6
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--MMAGAGWGAKGGA
AGAAAGTGAAAGTGA
 A C G T A C G T G T C A G T A C C G T A T A C G C G T A A C T G C G T A A C T G C G T A A C G T A C T G A C T G C G T A
C G T A C T A G C T G A T C G A C T G A C T A G C A G T C T A G C G T A C T G A C G T A T C A G A C G T C T A G C T G A

PB0140.1_Irf6_2/Jaspar

Match Rank:7
Score:0.51
Offset:-3
Orientation:reverse strand
Alignment:---MMAGAGWGAKGGA
NNNACCGAGAGTNNN-
 A C G T A C G T A C G T G T C A G T A C C G T A T A C G C G T A A C T G C G T A A C T G C G T A A C G T A C T G A C T G C G T A
A T C G G A C T C A T G G T C A A G T C G A T C C T A G T C G A T A C G G T C A C A T G C G A T T C A G T A C G A C G T A C G T

PB0114.1_Egr1_2/Jaspar

Match Rank:8
Score:0.51
Offset:1
Orientation:forward strand
Alignment:MMAGAGWGAKGGA----
-TGCGGAGTGGGACTGG
 G T C A G T A C C G T A T A C G C G T A A C T G C G T A A C T G C G T A A C G T A C T G A C T G C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C T G G A T C A C T G C T A G T C G A C T A G C A G T C T A G C A T G C A T G C G T A G A T C G C A T C T A G A C T G

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:9
Score:0.50
Offset:2
Orientation:reverse strand
Alignment:MMAGAGWGAKGGA
--TGATTGATGA-
 G T C A G T A C C G T A T A C G C G T A A C T G C G T A A C T G C G T A A C G T A C T G A C T G C G T A
A C G T A C G T C G A T T C A G G T C A A G C T C G A T C T A G C G T A A C G T C A T G C T G A A C G T

NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer

Match Rank:10
Score:0.50
Offset:3
Orientation:reverse strand
Alignment:MMAGAGWGAKGGA
---AACAGATGGT
 G T C A G T A C C G T A T A C G C G T A A C T G C G T A A C T G C G T A A C G T A C T G A C T G C G T A
A C G T A C G T A C G T T C G A T C G A A G T C C G T A A C T G G T C A G C A T A C T G A C T G A G C T