Information for 11-GAMATCACHC (Motif 29)

C A T G T C G A T G A C T C G A C A G T T A G C G T C A T A G C G T C A T G A C
Reverse Opposite:
A C T G C A G T A T C G C A G T A T C G G T C A A G C T A C T G A G C T G T A C
p-value:1e-6
log p-value:-1.550e+01
Information Content per bp:1.557
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif2.16%
Number of Background Sequences with motif201.2
Percentage of Background Sequences with motif0.42%
Average Position of motif in Targets42.9 +/- 29.7bp
Average Position of motif in Background46.0 +/- 28.8bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MGA/MA0801.1/Jaspar

Match Rank:1
Score:0.69
Offset:4
Orientation:reverse strand
Alignment:GAMATCACHC--
----TCACACCT
 C A T G T C G A T G A C T C G A C A G T T A G C G T C A T A G C G T C A T G A C A C G T A C G T
A C G T A C G T A C G T A C G T G A C T T G A C C T G A G A T C T C G A T A G C A G T C G A C T

TBX1/MA0805.1/Jaspar

Match Rank:2
Score:0.68
Offset:4
Orientation:reverse strand
Alignment:GAMATCACHC--
----TCACACCT
 C A T G T C G A T G A C T C G A C A G T T A G C G T C A T A G C G T C A T G A C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T G A C C T G A A T G C T C G A A G T C A G T C G A C T

TBX5/MA0807.1/Jaspar

Match Rank:3
Score:0.67
Offset:4
Orientation:reverse strand
Alignment:GAMATCACHC--
----TCACACCT
 C A T G T C G A T G A C T C G A C A G T T A G C G T C A T A G C G T C A T G A C A C G T A C G T
A C G T A C G T A C G T A C G T G A C T T G A C T C G A A G T C T G C A G T A C A G T C G A C T

TBX4/MA0806.1/Jaspar

Match Rank:4
Score:0.66
Offset:4
Orientation:reverse strand
Alignment:GAMATCACHC--
----TCACACCT
 C A T G T C G A T G A C T C G A C A G T T A G C G T C A T A G C G T C A T G A C A C G T A C G T
A C G T A C G T A C G T A C G T G A C T T G A C C T G A A G T C T C G A A T G C A G T C G A C T

PH0164.1_Six4/Jaspar

Match Rank:5
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-GAMATCACHC------
ATAAATGACACCTATCA
 A C G T C A T G T C G A T G A C T C G A C A G T T A G C G T C A T A G C G T C A T G A C A C G T A C G T A C G T A C G T A C G T A C G T
G C T A C A G T C T G A G T C A G C T A A G C T C A T G G T C A A G T C G T C A G T A C A G T C A G C T G T C A A G C T A G T C T C G A

Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.66
Offset:3
Orientation:forward strand
Alignment:GAMATCACHC---
---ATCACCCCAT
 C A T G T C G A T G A C T C G A C A G T T A G C G T C A T A G C G T C A T G A C A C G T A C G T A C G T
A C G T A C G T A C G T T C G A G C A T A T G C C T G A A T G C T A G C A G T C G T A C T C G A A G C T

TBX15/MA0803.1/Jaspar

Match Rank:7
Score:0.66
Offset:4
Orientation:reverse strand
Alignment:GAMATCACHC--
----TCACACCT
 C A T G T C G A T G A C T C G A C A G T T A G C G T C A T A G C G T C A T G A C A C G T A C G T
A C G T A C G T A C G T A C G T G A C T T G A C T C G A A T G C T G C A A G T C G A T C G A C T

SREBF1/MA0595.1/Jaspar

Match Rank:8
Score:0.64
Offset:3
Orientation:forward strand
Alignment:GAMATCACHC---
---ATCACCCCAC
 C A T G T C G A T G A C T C G A C A G T T A G C G T C A T A G C G T C A T G A C A C G T A C G T A C G T
A C G T A C G T A C G T T C G A A C G T A G T C C G T A A T G C T A G C A G T C T A G C C G T A A G T C

PB0157.1_Rara_2/Jaspar

Match Rank:9
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:GAMATCACHC------
NNCNTGACCCCGCTCT
 C A T G T C G A T G A C T C G A C A G T T A G C G T C A T A G C G T C A T G A C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T T G C A T G A C C A G T G A C T T C A G C G T A G T A C G T A C A T G C T A G C T C A G G T A C C A G T G T A C C A G T

PH0037.1_Hdx/Jaspar

Match Rank:10
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----GAMATCACHC--
AAGGCGAAATCATCGCA
 A C G T A C G T A C G T A C G T A C G T C A T G T C G A T G A C T C G A C A G T T A G C G T C A T A G C G T C A T G A C A C G T A C G T
C G T A C T G A A C T G C A T G G T A C C T A G T G C A C G T A C G T A A C G T A T G C G C T A G A C T G A T C A T C G G T A C T G C A