Information for 14-TGCACTAACCACT (Motif 28)

A G C T A T C G G A T C G C T A A T G C C G A T T G C A T G C A T G A C T G A C C G T A A G T C A C G T
Reverse Opposite:
G T C A A C T G C G A T A C T G A C T G A C G T A C G T C G T A T A C G C G A T C T A G T A G C T C G A
p-value:1e-8
log p-value:-1.886e+01
Information Content per bp:1.703
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.69%
Number of Background Sequences with motif92.0
Percentage of Background Sequences with motif0.19%
Average Position of motif in Targets51.6 +/- 25.7bp
Average Position of motif in Background47.0 +/- 23.0bp
Strand Bias (log2 ratio + to - strand density)1.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:1
Score:0.63
Offset:6
Orientation:reverse strand
Alignment:TGCACTAACCACT---
------MRSCACTYAA
 A G C T A T C G G A T C G C T A A T G C C G A T T G C A T G C A T G A C T G A C C G T A A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A

PH0004.1_Nkx3-2/Jaspar

Match Rank:2
Score:0.60
Offset:3
Orientation:forward strand
Alignment:TGCACTAACCACT-------
---CATAACCACTTAACAAC
 A G C T A T C G G A T C G C T A A T G C C G A T T G C A T G C A T G A C T G A C C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T G A C G C T A C G A T T C G A G C T A T A G C A G T C C G T A G T A C A G C T A G C T G C T A C G T A T A G C T G C A G T C A G A T C

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:3
Score:0.60
Offset:6
Orientation:forward strand
Alignment:TGCACTAACCACT---
------AAGCACTTAA
 A G C T A T C G G A T C G C T A A T G C C G A T T G C A T G C A T G A C T G A C C G T A A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C G A T C G A T A C G G A T C G T C A G T A C C G A T A G C T G T C A T G C A

NKX2-3/MA0672.1/Jaspar

Match Rank:4
Score:0.59
Offset:7
Orientation:forward strand
Alignment:TGCACTAACCACT----
-------ACCACTTGAA
 A G C T A T C G G A T C G C T A A T G C C G A T T G C A T G C A T G A C T G A C C G T A A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G C A T A G C G A T C G C T A G T A C A C G T A G C T T C A G C G T A T C G A

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:5
Score:0.59
Offset:6
Orientation:forward strand
Alignment:TGCACTAACCACT---
------AASCACTCAA
 A G C T A T C G G A T C G C T A A T G C C G A T T G C A T G C A T G A C T G A C C G T A A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A

PH0111.1_Nkx2-2/Jaspar

Match Rank:6
Score:0.58
Offset:4
Orientation:forward strand
Alignment:TGCACTAACCACT--------
----ATAACCACTTGAAAATT
 A G C T A T C G G A T C G C T A A T G C C G A T T G C A T G C A T G A C T G A C C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G C A T C G A T T C G A C T G A T A G C A G T C G C T A G T A C C G A T A G C T T C A G C G T A T C G A C G T A C G T A A C G T C G A T

Nkx3-1/MA0124.2/Jaspar

Match Rank:7
Score:0.58
Offset:7
Orientation:forward strand
Alignment:TGCACTAACCACT---
-------ACCACTTAA
 A G C T A T C G G A T C G C T A A T G C C G A T T G C A T G C A T G A C T G A C C G T A A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A T A G C A G T C G C T A G T A C A G C T A G C T G C T A C T G A

NKX2-8/MA0673.1/Jaspar

Match Rank:8
Score:0.56
Offset:8
Orientation:forward strand
Alignment:TGCACTAACCACT----
--------CCACTTGAA
 A G C T A T C G G A T C G C T A A T G C C G A T T G C A T G C A T G A C T G A C C G T A A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C G A T C G T C A G A T C A G C T G A C T T A C G G C T A T C G A

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:9
Score:0.56
Offset:7
Orientation:forward strand
Alignment:TGCACTAACCACT----
-------RSCACTYRAG
 A G C T A T C G G A T C G C T A A T G C C G A T T G C A T G C A T G A C T G A C C G T A A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G T A C G A G T C C G T A A G T C A C G T A G T C T C G A C G T A T A C G

NKX3-2/MA0122.2/Jaspar

Match Rank:10
Score:0.56
Offset:7
Orientation:forward strand
Alignment:TGCACTAACCACT---
-------ACCACTTAA
 A G C T A T C G G A T C G C T A A T G C C G A T T G C A T G C A T G A C T G A C C G T A A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A T A G C G A T C G C T A G T A C A G C T G A C T G C T A C T G A