Information for 13-CCAATTTGTC (Motif 34)

A G T C A G T C C G T A C G T A A C G T A C G T A C G T A C T G A C G T A G T C
Reverse Opposite:
A C T G C G T A A G T C C G T A C G T A C G T A A C G T A C G T A C T G A C T G
p-value:1e-5
log p-value:-1.260e+01
Information Content per bp:1.530
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.45%
Number of Background Sequences with motif2.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets59.7 +/- 34.1bp
Average Position of motif in Background42.7 +/- 10.8bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0089.1_Isx/Jaspar

Match Rank:1
Score:0.71
Offset:-4
Orientation:forward strand
Alignment:----CCAATTTGTC--
ACTCCTAATTAGTCGT
 A C G T A C G T A C G T A C G T A G T C A G T C C G T A C G T A A C G T A C G T A C G T A C T G A C G T A G T C A C G T A C G T
G C T A T G A C A G C T T G A C G A T C A G C T G C T A C G T A C G A T C A G T C T G A C T A G A C G T A G T C T A C G C G A T

PH0033.1_Gbx1/Jaspar

Match Rank:2
Score:0.66
Offset:-4
Orientation:reverse strand
Alignment:----CCAATTTGTC---
TNCACTAATTAGTNNNN
 A C G T A C G T A C G T A C G T A G T C A G T C C G T A C G T A A C G T A C G T A C G T A C T G A C G T A G T C A C G T A C G T A C G T
C G A T T G C A T G A C T G C A G T A C G A C T G T C A C T G A A G C T A C G T C T G A A C T G A G C T A C T G T A C G G A T C C G T A

PH0107.1_Msx2/Jaspar

Match Rank:3
Score:0.66
Offset:-4
Orientation:reverse strand
Alignment:----CCAATTTGTC---
ANCGCTAATTGGTCTNN
 A C G T A C G T A C G T A C G T A G T C A G T C C G T A C G T A A C G T A C G T A C G T A C T G A C G T A G T C A C G T A C G T A C G T
T C G A C T A G G T A C C T A G G T A C G A C T C G T A C G T A A C G T C G A T C T A G T A C G G A C T A T G C G A C T A C G T A G T C

PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:4
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:CCAATTTGTC-----
NNAATTAGTCACGGT
 A G T C A G T C C G T A C G T A A C G T A C G T A C G T A C T G A C G T A G T C A C G T A C G T A C G T A C G T A C G T
A G C T G A T C T C G A C G T A A C G T A G C T C G T A A C T G G A C T G A T C G T C A G A T C C T A G A T C G G C A T

PB0032.1_IRC900814_1/Jaspar

Match Rank:5
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:CCAATTTGTC------
GNNATTTGTCGTAANN
 A G T C A G T C C G T A C G T A A C G T A C G T A C G T A C T G A C G T A G T C A C G T A C G T A C G T A C G T A C G T A C G T
T C A G G A T C G C A T C G T A C G A T C G A T G A C T A C T G G A C T A G T C A C T G C A G T T C G A C T G A G C T A G C A T

PH0034.1_Gbx2/Jaspar

Match Rank:6
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----CCAATTTGTC---
AGCGCTAATTAGCGATT
 A C G T A C G T A C G T A C G T A G T C A G T C C G T A C G T A A C G T A C G T A C G T A C T G A C G T A G T C A C G T A C G T A C G T
C G T A T A C G T G A C T C A G A T G C A G C T G T C A G C T A C A G T A C G T C T G A T A C G A G T C T A C G C T G A A C G T C A G T

MSX1/MA0666.1/Jaspar

Match Rank:7
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CCAATTTGTC
CCAATTAG--
 A G T C A G T C C G T A C G T A A C G T A C G T A C G T A C T G A C G T A G T C
A T G C G A T C T G C A G T C A A C G T A C G T T G C A T C A G A C G T A C G T

MSX2/MA0708.1/Jaspar

Match Rank:8
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CCAATTTGTC
CCAATTAA--
 A G T C A G T C C G T A C G T A A C G T A C G T A C G T A C T G A C G T A G T C
T A G C G A T C G T C A G T C A A C G T A G C T G T C A T C G A A C G T A C G T

NFY(CCAAT)/Promoter/Homer

Match Rank:9
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CCAATTTGTC
AGCCAATCGG--
 A C G T A C G T A G T C A G T C C G T A C G T A A C G T A C G T A C G T A C T G A C G T A G T C
T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G A C G T A C G T

GBX1/MA0889.1/Jaspar

Match Rank:10
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CCAATTTGTC
ACTAATTAGC-
 A C G T A G T C A G T C C G T A C G T A A C G T A C G T A C G T A C T G A C G T A G T C
T C G A A T G C G A C T T C G A T G C A G A C T G A C T G C T A T A C G A G T C A C G T