Information for 21-TTTACTATAGTAA (Motif 42)

A C G T A C G T A C G T C G T A G T A C C G A T C G T A A C G T C G T A A C T G G A C T C G T A C G T A
Reverse Opposite:
A C G T A C G T C T G A A G T C A C G T C G T A A C G T C G T A A C T G G A C T C G T A C G T A G T C A
p-value:1e-4
log p-value:-9.474e+00
Information Content per bp:1.917
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.48%
Number of Background Sequences with motif6.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets44.7 +/- 31.5bp
Average Position of motif in Background53.6 +/- 18.5bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RFX5/MA0510.2/Jaspar

Match Rank:1
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-TTTACTATAGTAA--
NGTTGCCATGGCAACG
 A C G T A C G T A C G T A C G T C G T A G T A C C G A T C G T A A C G T C G T A A C T G G A C T C G T A C G T A A C G T A C G T
A T G C C T A G A C G T G A C T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C T G A T C G A G A T C T A C G

RFX2/MA0600.2/Jaspar

Match Rank:2
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-TTTACTATAGTAA--
CGTTGCCATGGCAACG
 A C G T A C G T A C G T A C G T C G T A G T A C C G A T C G T A A C G T C G T A A C T G G A C T C G T A C G T A A C G T A C G T
A T G C C T A G G A C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C T G A A G T C T A C G

RFX3/MA0798.1/Jaspar

Match Rank:3
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-TTTACTATAGTAA--
CGTTGCCATGGCAACN
 A C G T A C G T A C G T A C G T C G T A G T A C C G A T C G T A A C G T C G T A A C T G G A C T C G T A C G T A A C G T A C G T
A T G C C T A G A G C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C T G A G A T C T A C G

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:4
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:TTTACTATAGTAA--
-TTGCCATGGCAACC
 A C G T A C G T A C G T C G T A G T A C C G A T C G T A A C G T C G T A A C T G G A C T C G T A C G T A A C G T A C G T
A C G T A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A G A T C G T A C

RFX4/MA0799.1/Jaspar

Match Rank:5
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-TTTACTATAGTAA--
CGTTGCCATGGCAACN
 A C G T A C G T A C G T A C G T C G T A G T A C C G A T C G T A A C G T C G T A A C T G G A C T C G T A C G T A A C G T A C G T
A T G C C T A G A G C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C G T A G A T C T A C G

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:6
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:TTTACTATAGTAA--
-TTGCCATGGCAACN
 A C G T A C G T A C G T C G T A G T A C C G A T C G T A A C G T C G T A A C T G G A C T C G T A C G T A A C G T A C G T
A C G T A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A G T C T G A C

HOXD11/MA0908.1/Jaspar

Match Rank:7
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--TTTACTATAGTAA
NTTTTACGAC-----
 A C G T A C G T A C G T A C G T A C G T C G T A G T A C C G A T C G T A A C G T C G T A A C T G G A C T C G T A C G T A
C G A T C G A T C G A T C G A T C G A T C G T A A G T C C T A G C G T A A G T C A C G T A C G T A C G T A C G T A C G T

PB0069.1_Sox21_1/Jaspar

Match Rank:8
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-TTTACTATAGTAA--
NNTAATTATAATNANN
 A C G T A C G T A C G T A C G T C G T A G T A C C G A T C G T A A C G T C G T A A C T G G A C T C G T A C G T A A C G T A C G T
G T A C G C A T G C A T G C T A C G T A C G A T C G A T C T G A G A C T C G T A C G T A C G A T C G A T C G T A C G T A C G T A

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:9
Score:0.54
Offset:0
Orientation:forward strand
Alignment:TTTACTATAGTAA--
GTTGCCATGGCAACM
 A C G T A C G T A C G T C G T A G T A C C G A T C G T A A C G T C G T A A C T G G A C T C G T A C G T A A C G T A C G T
C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C T G A C

PB0079.1_Sry_1/Jaspar

Match Rank:10
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-TTTACTATAGTAA--
TATAATTATAATATTC
 A C G T A C G T A C G T A C G T C G T A G T A C C G A T C G T A A C G T C G T A A C T G G A C T C G T A C G T A A C G T A C G T
A C G T G C T A C A G T G C T A C G T A C G A T C G A T C T G A G A C T C G T A C G T A C G A T C T G A C G A T C A G T T G A C