Information for 2-GTTTGTTTTGMTGAGA (Motif 3)

A C T G A C G T A C G T A C G T T A C G A G C T A C G T A G C T C A G T A T C G G T C A A C G T C T A G C T G A C T A G C G T A
Reverse Opposite:
G A C T A G T C A G C T G A T C T C G A A C G T A T G C G T C A C T G A T G C A C T G A A G T C T G C A C G T A C G T A A G T C
p-value:1e-15
log p-value:-3.464e+01
Information Content per bp:1.689
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.59%
Number of Background Sequences with motif11.9
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets46.9 +/- 21.4bp
Average Position of motif in Background46.5 +/- 32.8bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0005.1_Forkhead_class/Jaspar

Match Rank:1
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-GTTTGTTTTGMTGAGA
TGTTTATTT--------
 A C G T A C T G A C G T A C G T A C G T T A C G A G C T A C G T A G C T C A G T A T C G G T C A A C G T C T A G C T G A C T A G C G T A
G C A T C T A G A G C T G A C T C A G T C T G A A G C T C A G T A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Foxd3/MA0041.1/Jaspar

Match Rank:2
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----GTTTGTTTTGMTGAGA
GAATGTTTGTTT--------
 A C G T A C G T A C G T A C G T A C T G A C G T A C G T A C G T T A C G A G C T A C G T A G C T C A G T A T C G G T C A A C G T C T A G C T G A C T A G C G T A
C T A G G C T A G C T A G A C T C T A G A C G T C G A T C A G T C T A G G A C T A C G T A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

POL007.1_BREd/Jaspar

Match Rank:3
Score:0.57
Offset:0
Orientation:forward strand
Alignment:GTTTGTTTTGMTGAGA
GTTTGTT---------
 A C T G A C G T A C G T A C G T T A C G A G C T A C G T A G C T C A G T A T C G G T C A A C G T C T A G C T G A C T A G C G T A
C T A G A C G T C A G T A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0121.1_Foxj3_2/Jaspar

Match Rank:4
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--GTTTGTTTTGMTGAGA
NNCTTTGTTTTGNTNNN-
 A C G T A C G T A C T G A C G T A C G T A C G T T A C G A G C T A C G T A G C T C A G T A T C G G T C A A C G T C T A G C T G A C T A G C G T A
G C A T A T G C G T A C C G A T G C A T C G A T C T A G C G A T C A G T C G A T A C G T C T A G C A T G G A C T T A C G G C A T A C G T A C G T

PB0123.1_Foxl1_2/Jaspar

Match Rank:5
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--GTTTGTTTTGMTGAGA
NNTTTTGTTTTGATNT--
 A C G T A C G T A C T G A C G T A C G T A C G T T A C G A G C T A C G T A G C T C A G T A T C G G T C A A C G T C T A G C T G A C T A G C G T A
C A G T C A T G G A C T C A G T G C A T G C A T T C A G A C G T C A G T C G A T C A G T C T A G G C T A G C A T G C T A C G A T A C G T A C G T

Sox3/MA0514.1/Jaspar

Match Rank:6
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-GTTTGTTTTGMTGAGA
CCTTTGTTTT-------
 A C G T A C T G A C G T A C G T A C G T T A C G A G C T A C G T A G C T C A G T A T C G G T C A A C G T C T A G C T G A C T A G C G T A
A T G C A G T C C G A T A C G T A C G T A T C G A C G T A G C T A G C T A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0071.1_Sox4_1/Jaspar

Match Rank:7
Score:0.55
Offset:-5
Orientation:reverse strand
Alignment:-----GTTTGTTTTGMTGAGA
TNNTCCTTTGTTCTNNT----
 A C G T A C G T A C G T A C G T A C G T A C T G A C G T A C G T A C G T T A C G A G C T A C G T A G C T C A G T A T C G G T C A A C G T C T A G C T G A C T A G C G T A
C G A T C G T A T C A G A G C T A G T C A G T C C G A T A C G T C G A T T A C G C G A T A G C T G A T C G C A T G A C T T G A C C A G T A C G T A C G T A C G T A C G T

FOXD2/MA0847.1/Jaspar

Match Rank:8
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-GTTTGTTTTGMTGAGA
TGTTTAC----------
 A C G T A C T G A C G T A C G T A C G T T A C G A G C T A C G T A G C T C A G T A T C G G T C A A C G T C T A G C T G A C T A G C G T A
G A C T T C A G C G A T C A G T C A G T C T G A A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Foxq1/MA0040.1/Jaspar

Match Rank:9
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----GTTTGTTTTGMTGAGA
TATTGTTTATT---------
 A C G T A C G T A C G T A C G T A C T G A C G T A C G T A C G T T A C G A G C T A C G T A G C T C A G T A T C G G T C A A C G T C T A G C T G A C T A G C G T A
G A C T C T G A G C A T C G A T A C T G A C G T A C G T A C G T C T G A A C G T C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:10
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---GTTTGTTTTGMTGAGA
NNTGTTTATTTTGGCA---
 A C G T A C G T A C G T A C T G A C G T A C G T A C G T T A C G A G C T A C G T A G C T C A G T A T C G G T C A A C G T C T A G C T G A C T A G C G T A
C G A T G A C T C G A T T C A G G A C T A C G T C A G T C T G A G A C T G A C T A G C T C G A T A C T G A T C G G T A C G C T A A C G T A C G T A C G T