Information for 6-KTKATTTMTKGCA (Motif 11)

A C T G A C G T A C T G C G T A A C G T A C G T A C G T G T C A A C G T A C T G A C T G A G T C C G T A
Reverse Opposite:
A C G T A C T G G T A C G T A C C G T A A C G T C G T A C G T A C G T A C G A T G T A C C G T A G T A C
p-value:1e-11
log p-value:-2.647e+01
Information Content per bp:1.873
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.80%
Number of Background Sequences with motif1.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets52.0 +/- 27.2bp
Average Position of motif in Background55.7 +/- 29.9bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:1
Score:0.82
Offset:1
Orientation:reverse strand
Alignment:KTKATTTMTKGCA
-TGATTTATGGCC
 A C T G A C G T A C T G C G T A A C G T A C G T A C G T G T C A A C G T A C T G A C T G A G T C C G T A
A C G T C G A T C T A G C G T A C G A T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C

Hoxc9/MA0485.1/Jaspar

Match Rank:2
Score:0.81
Offset:0
Orientation:reverse strand
Alignment:KTKATTTMTKGCA
NTGATTTATGGCC
 A C T G A C G T A C T G C G T A A C G T A C G T A C G T G T C A A C G T A C T G A C T G A G T C C G T A
T C A G C G A T C T A G C G T A A C G T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C

Hoxa9/MA0594.1/Jaspar

Match Rank:3
Score:0.80
Offset:1
Orientation:reverse strand
Alignment:KTKATTTMTKGCA
-TGATTTATGGC-
 A C T G A C G T A C T G C G T A A C G T A C G T A C G T G T C A A C G T A C T G A C T G A G T C C G T A
A C G T C G A T C T A G G C T A A C G T C G A T A C G T C G T A A G C T C A T G C T A G A T G C A C G T

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:4
Score:0.76
Offset:1
Orientation:reverse strand
Alignment:KTKATTTMTKGCA
-TGATTTATGGCC
 A C T G A C G T A C T G C G T A A C G T A C G T A C G T G T C A A C G T A C T G A C T G A G T C C G T A
A C G T C G A T C T A G G C T A C G A T C A G T A C G T G T C A A G C T C A T G T C A G A G T C A G T C

CDX2/MA0465.1/Jaspar

Match Rank:5
Score:0.69
Offset:3
Orientation:reverse strand
Alignment:KTKATTTMTKGCA-
---TTTTATGGCTN
 A C T G A C G T A C T G C G T A A C G T A C G T A C G T G T C A A C G T A C T G A C T G A G T C C G T A A C G T
A C G T A C G T A C G T A G C T A C G T A C G T A C G T C G T A A C G T C A T G C T A G A G T C G A C T A G C T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:6
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:KTKATTTMTKGCA
-DGWTTTATGRCN
 A C T G A C G T A C T G C G T A A C G T A C G T A C G T G T C A A C G T A C T G A C T G A G T C C G T A
A C G T C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:7
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:KTKATTTMTKGCA
--NTTTTATGAC-
 A C T G A C G T A C T G C G T A A C G T A C G T A C G T G T C A A C G T A C T G A C T G A G T C C G T A
A C G T A C G T C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C A C G T

CDX1/MA0878.1/Jaspar

Match Rank:8
Score:0.68
Offset:3
Orientation:reverse strand
Alignment:KTKATTTMTKGCA
---TTTTATTGC-
 A C T G A C G T A C T G C G T A A C G T A C G T A C G T G T C A A C G T A C T G A C T G A G T C C G T A
A C G T A C G T A C G T C A G T C G A T G C A T C G A T C G T A A G C T C A G T C T A G A G T C A C G T

Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer

Match Rank:9
Score:0.67
Offset:0
Orientation:forward strand
Alignment:KTKATTTMTKGCA
GCTATTTTTAGC-
 A C T G A C G T A C T G C G T A A C G T A C G T A C G T G T C A A C G T A C T G A C T G A G T C C G T A
C A T G A G T C A G C T C G T A C G A T C G A T G C A T G C A T C G A T C T G A C A T G T G A C A C G T

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:10
Score:0.66
Offset:1
Orientation:forward strand
Alignment:KTKATTTMTKGCA
-TGATTRATGGCY
 A C T G A C G T A C T G C G T A A C G T A C G T A C G T G T C A A C G T A C T G A C T G A G T C C G T A
A C G T C G A T C T A G T C G A A G C T C G A T C T G A C G T A A G C T A C T G C T A G A T G C G A T C