Information for 24-AGMTSACTSYRGGAGA (Motif 46)

C G T A A C T G G T C A A C G T A T G C C G T A A G T C C G A T T A C G A G T C C T A G A C T G A C T G C G T A A C T G C G T A
Reverse Opposite:
A C G T A G T C A C G T A G T C A G T C A G C T C T A G A T C G C G T A A C T G A C G T A T C G C G T A A C G T A G T C A C G T
p-value:1e-3
log p-value:-9.176e+00
Information Content per bp:1.868
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif0.29%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets58.5 +/- 9.5bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nr1h3::Rxra/MA0494.1/Jaspar

Match Rank:1
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---AGMTSACTSYRGGAGA
NNGAGGTTACTNNAGGTCA
 A C G T A C G T A C G T C G T A A C T G G T C A A C G T A T G C C G T A A G T C C G A T T A C G A G T C C T A G A C T G A C T G C G T A A C T G C G T A
T G A C G T C A T C A G T C G A C A T G C A T G A G C T G A C T G C T A G A T C G A C T G A C T A G C T T C G A C T A G C A T G C A G T A G T C T C G A

LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer

Match Rank:2
Score:0.58
Offset:0
Orientation:forward strand
Alignment:AGMTSACTSYRGGAGA
GGGTTACTANAGGTCA
 C G T A A C T G G T C A A C G T A T G C C G T A A G T C C G A T T A C G A G T C C T A G A C T G A C T G C G T A A C T G C G T A
C T A G C A T G C A T G A G C T G A C T C G T A G A T C A G C T G T C A A T G C T C G A C T A G C A T G A C G T A G T C C T G A

NR4A2/MA0160.1/Jaspar

Match Rank:3
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-AGMTSACTSYRGGAGA
AAGGTCAC---------
 A C G T C G T A A C T G G T C A A C G T A T G C C G T A A G T C C G A T T A C G A G T C C T A G A C T G A C T G C G T A A C T G C G T A
C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer

Match Rank:4
Score:0.51
Offset:1
Orientation:forward strand
Alignment:AGMTSACTSYRGGAGA
-GGTCANYTGAGGWCA
 C G T A A C T G G T C A A C G T A T G C C G T A A G T C C G A T T A C G A G T C C T A G A C T G A C T G C G T A A C T G C G T A
A C G T C T A G C A T G A C G T A G T C G C T A A G C T A G T C A G C T T C A G C T G A A C T G C A T G G C A T A T G C C G T A

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:5
Score:0.50
Offset:3
Orientation:reverse strand
Alignment:AGMTSACTSYRGGAGA--
---DCHCAGCAGGRGGCC
 C G T A A C T G G T C A A C G T A T G C C G T A A G T C C G A T T A C G A G T C C T A G A C T G A C T G C G T A A C T G C G T A A C G T A C G T
A C G T A C G T A C G T C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

PB0207.1_Zic3_2/Jaspar

Match Rank:6
Score:0.50
Offset:1
Orientation:forward strand
Alignment:AGMTSACTSYRGGAGA
-GAGCACAGCAGGACA
 C G T A A C T G G T C A A C G T A T G C C G T A A G T C C G A T T A C G A G T C C T A G A C T G A C T G C G T A A C T G C G T A
A C G T C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A

Rarg(var.2)/MA0860.1/Jaspar

Match Rank:7
Score:0.50
Offset:-1
Orientation:forward strand
Alignment:-AGMTSACTSYRGGAGA
AAGGTCACGAAAGGTCA
 A C G T C G T A A C T G G T C A A C G T A T G C C G T A A G T C C G A T T A C G A G T C C T A G A C T G A C T G C G T A A C T G C G T A
C T G A T C G A A T C G A C T G A C G T G T A C T C G A G T A C A T C G T C G A T C G A T C G A A C T G A C T G G C A T G A T C T C G A

PB0205.1_Zic1_2/Jaspar

Match Rank:8
Score:0.50
Offset:1
Orientation:forward strand
Alignment:AGMTSACTSYRGGAGA
-CCACACAGCAGGAGA
 C G T A A C T G G T C A A C G T A T G C C G T A A G T C C G A T T A C G A G T C C T A G A C T G A C T G C G T A A C T G C G T A
A C G T A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

PB0206.1_Zic2_2/Jaspar

Match Rank:9
Score:0.49
Offset:1
Orientation:forward strand
Alignment:AGMTSACTSYRGGAGA
-CCACACAGCAGGAGA
 C G T A A C T G G T C A A C G T A T G C C G T A A G T C C G A T T A C G A G T C C T A G A C T G A C T G C G T A A C T G C G T A
A C G T G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:10
Score:0.48
Offset:4
Orientation:forward strand
Alignment:AGMTSACTSYRGGAGA
----CACAGCAGGGGG
 C G T A A C T G G T C A A C G T A T G C C G T A A G T C C G A T T A C G A G T C C T A G A C T G A C T G C G T A A C T G C G T A
A C G T A C G T A C G T A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G