Information for 12-AGGCTATTAA (Motif 35)

C G T A A C T G A C T G A G T C A C G T C G T A A C G T A C G T C G T A C G T A
Reverse Opposite:
A C G T C G A T C G T A C G T A C G A T C G T A A C T G A G T C A G T C A C G T
p-value:1e-6
log p-value:-1.463e+01
Information Content per bp:1.938
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.58%
Number of Background Sequences with motif4.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets42.2 +/- 20.9bp
Average Position of motif in Background45.4 +/- 25.5bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.69
Offset:1
Orientation:forward strand
Alignment:AGGCTATTAA-
-GGCCATTAAC
 C G T A A C T G A C T G A G T C A C G T C G T A A C G T A C G T C G T A C G T A A C G T
A C G T C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:2
Score:0.68
Offset:1
Orientation:forward strand
Alignment:AGGCTATTAA-
-NGCAATTAAA
 C G T A A C T G A C T G A G T C A C G T C G T A A C G T A C G T C G T A C G T A A C G T
A C G T T A C G A T C G G A T C G T C A C T G A G C A T C G A T G C T A T C G A G C T A

Hmx1/MA0896.1/Jaspar

Match Rank:3
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--AGGCTATTAA-----
ACAAGCAATTAATGAAT
 A C G T A C G T C G T A A C T G A C T G A G T C A C G T C G T A A C G T A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T
T G C A T A G C T G C A C T G A T C A G G A T C C T G A G T C A A C G T G A C T C G T A C G T A C G A T T A C G T G C A C G T A A C G T

PH0041.1_Hmx1/Jaspar

Match Rank:4
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--AGGCTATTAA-----
ACAAGCAATTAATGAAT
 A C G T A C G T C G T A A C T G A C T G A G T C A C G T C G T A A C G T A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T
T G C A T A G C T G C A C T G A T C A G G A T C C T G A G T C A A C G T G A C T C G T A C G T A C G A T T A C G T G C A C G T A A C G T

PH0073.1_Hoxc9/Jaspar

Match Rank:5
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--AGGCTATTAA----
GGAGGTCATTAATTAT
 A C G T A C G T C G T A A C T G A C T G A G T C A C G T C G T A A C G T A C G T C G T A C G T A A C G T A C G T A C G T A C G T
T C A G C A T G T C G A C T A G T C A G G A C T G T A C C T G A G C A T G C A T C G T A G C T A G A C T G A C T C G T A A C G T

PH0063.1_Hoxb8/Jaspar

Match Rank:6
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--AGGCTATTAA----
ACCGGCAATTAATAAA
 A C G T A C G T C G T A A C T G A C T G A G T C A C G T C G T A A C G T A C G T C G T A C G T A A C G T A C G T A C G T A C G T
G C T A T A G C A G T C C A T G C T A G G A T C G T C A C G T A C G A T G C A T C G T A G C T A G A C T G T C A C T G A C G T A

Hmx2/MA0897.1/Jaspar

Match Rank:7
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--AGGCTATTAA-----
ACAAGCAATTAAAGAAT
 A C G T A C G T C G T A A C T G A C T G A G T C A C G T C G T A A C G T A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T
T C G A T A G C T G C A C T G A T C A G G A T C C T G A G T C A C G A T G A C T C G T A C G T A G C T A T C A G T C G A C T G A C A G T

PH0042.1_Hmx2/Jaspar

Match Rank:8
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--AGGCTATTAA-----
ACAAGCAATTAAAGAAT
 A C G T A C G T C G T A A C T G A C T G A G T C A C G T C G T A A C G T A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T
T C G A T A G C T G C A C T G A T C A G G A T C C T G A G T C A C G A T G A C T C G T A C G T A G C T A T C A G T C G A C T G A C A G T

Hmx3/MA0898.1/Jaspar

Match Rank:9
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--AGGCTATTAA-----
ACAAGCAATTAAAGAAT
 A C G T A C G T C G T A A C T G A C T G A G T C A C G T C G T A A C G T A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T
T C G A A T G C T G C A T C G A C A T G G A T C C T G A G T C A C G A T G A C T C G T A C G T A G C T A C T A G T C G A C G T A C A G T

PH0043.1_Hmx3/Jaspar

Match Rank:10
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--AGGCTATTAA-----
ACAAGCAATTAAAGAAT
 A C G T A C G T C G T A A C T G A C T G A G T C A C G T C G T A A C G T A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T
T C G A A T G C T G C A T C G A C A T G G A T C C T G A G T C A C G A T G A C T C G T A C G T A G C T A C T A G T C G A C G T A C A G T