Information for 7-GMTSYCATAAATC (Motif 9)

A C T G G T A C C G A T A T C G G A T C G A T C G T C A A C G T C G T A G T C A C G T A A G C T T G A C
Reverse Opposite:
A C T G C T G A C G A T A C G T A C G T G T C A C A G T C T A G C T A G A T G C C G T A C A T G A G T C
p-value:1e-11
log p-value:-2.581e+01
Information Content per bp:1.730
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.67%
Number of Background Sequences with motif43.9
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets37.1 +/- 24.2bp
Average Position of motif in Background58.7 +/- 29.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxa9/MA0594.1/Jaspar

Match Rank:1
Score:0.77
Offset:3
Orientation:forward strand
Alignment:GMTSYCATAAATC-
---GCCATAAATCA
 A C T G G T A C C G A T A T C G G A T C G A T C G T C A A C G T C G T A G T C A C G T A A G C T T G A C A C G T
A C G T A C G T A C G T T A C G G A T C G T A C T C G A A C G T T G C A G C T A G T C A C G A T G A T C G C T A

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:2
Score:0.76
Offset:2
Orientation:forward strand
Alignment:GMTSYCATAAATC-
--GGCCATAAATCA
 A C T G G T A C C G A T A T C G G A T C G A T C G T C A A C G T C G T A G T C A C G T A A G C T T G A C A C G T
A C G T A C G T C T A G T A C G G A T C G T A C C T G A A G C T T G C A G C T A C G T A G C A T G A T C G C T A

Hoxc9/MA0485.1/Jaspar

Match Rank:3
Score:0.76
Offset:2
Orientation:forward strand
Alignment:GMTSYCATAAATC--
--GGCCATAAATCAC
 A C T G G T A C C G A T A T C G G A T C G A T C G T C A A C G T C G T A G T C A C G T A A G C T T G A C A C G T A C G T
A C G T A C G T C T A G T A C G G A T C G T A C C T G A A G C T T G C A C G T A G T C A C G A T G A T C G C T A A G T C

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:4
Score:0.75
Offset:2
Orientation:forward strand
Alignment:GMTSYCATAAATC-
--GGCCATAAATCA
 A C T G G T A C C G A T A T C G G A T C G A T C G T C A A C G T C G T A G T C A C G T A A G C T T G A C A C G T
A C G T A C G T C T A G T A C G A G T C G T A C T C G A A C G T G T C A G C T A G C T A C G A T A G T C G C T A

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:5
Score:0.72
Offset:2
Orientation:forward strand
Alignment:GMTSYCATAAATC-
--NGYCATAAAWCH
 A C T G G T A C C G A T A T C G G A T C G A T C G T C A A C G T C G T A G T C A C G T A A G C T T G A C A C G T
A C G T A C G T T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:6
Score:0.67
Offset:3
Orientation:forward strand
Alignment:GMTSYCATAAATC
---GTCATAAAAN
 A C T G G T A C C G A T A T C G G A T C G A T C G T C A A C G T C G T A G T C A C G T A A G C T T G A C
A C G T A C G T A C G T T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T

CDX1/MA0878.1/Jaspar

Match Rank:7
Score:0.66
Offset:3
Orientation:forward strand
Alignment:GMTSYCATAAATC
---GCAATAAAA-
 A C T G G T A C C G A T A T C G G A T C G A T C G T C A A C G T C G T A G T C A C G T A A G C T T G A C
A C G T A C G T A C G T T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A A C G T

CDX2/MA0465.1/Jaspar

Match Rank:8
Score:0.66
Offset:1
Orientation:forward strand
Alignment:GMTSYCATAAATC
-AAGCCATAAAA-
 A C T G G T A C C G A T A T C G G A T C G A T C G T C A A C G T C G T A G T C A C G T A A G C T T G A C
A C G T T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A A C G T

PH0065.1_Hoxc10/Jaspar

Match Rank:9
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-GMTSYCATAAATC--
TAAAGTCGTAAAACGT
 A C G T A C T G G T A C C G A T A T C G G A T C G A T C G T C A A C G T C G T A G T C A C G T A A G C T T G A C A C G T A C G T
G A C T C G T A C G T A C T G A T C A G A G C T G T A C C T A G A C G T C G T A C G T A G C T A C G T A G A T C A T C G A C G T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:10
Score:0.63
Offset:2
Orientation:forward strand
Alignment:GMTSYCATAAATC
--NCYAATAAAA-
 A C T G G T A C C G A T A T C G G A T C G A T C G T C A A C G T C G T A G T C A C G T A A G C T T G A C
A C G T A C G T C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A A C G T