Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 715)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 47193)	% of Background Sequences with Motif
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-49	-1.148e+02	0.0000	80.0	11.19%	561.6	1.19%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e-47	-1.089e+02	0.0000	100.0	13.99%	1043.9	2.20%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-46	-1.082e+02	0.0000	98.0	13.71%	1004.6	2.12%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-44	-1.019e+02	0.0000	104.0	14.55%	1234.2	2.61%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e-43	-1.005e+02	0.0000	89.0	12.45%	883.8	1.87%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-42	-9.739e+01	0.0000	101.0	14.13%	1220.9	2.58%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-41	-9.459e+01	0.0000	61.0	8.53%	376.2	0.79%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-40	-9.294e+01	0.0000	107.0	14.97%	1453.3	3.07%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-17	-4.134e+01	0.0000	46.0	6.43%	601.3	1.27%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e-17	-4.042e+01	0.0000	49.0	6.85%	700.8	1.48%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-16	-3.793e+01	0.0000	34.0	4.76%	347.1	0.73%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e-14	-3.425e+01	0.0000	54.0	7.55%	984.7	2.08%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-14	-3.419e+01	0.0000	68.0	9.51%	1480.8	3.13%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-14	-3.372e+01	0.0000	25.0	3.50%	199.5	0.42%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-8	-1.869e+01	0.0000	18.0	2.52%	212.0	0.45%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-7	-1.618e+01	0.0000	45.0	6.29%	1232.4	2.60%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-6	-1.605e+01	0.0000	69.0	9.65%	2319.4	4.90%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-6	-1.513e+01	0.0000	99.0	13.85%	3883.9	8.20%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-6	-1.462e+01	0.0000	63.0	8.81%	2125.1	4.49%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-6	-1.439e+01	0.0000	53.0	7.41%	1673.3	3.53%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-5	-1.374e+01	0.0000	27.0	3.78%	607.4	1.28%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-5	-1.351e+01	0.0000	48.0	6.71%	1495.7	3.16%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e-5	-1.329e+01	0.0000	49.0	6.85%	1553.7	3.28%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-5	-1.293e+01	0.0000	72.0	10.07%	2684.0	5.67%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e-5	-1.283e+01	0.0000	34.0	4.76%	920.0	1.94%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e-5	-1.251e+01	0.0001	45.0	6.29%	1415.4	2.99%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-5	-1.165e+01	0.0001	49.0	6.85%	1652.3	3.49%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-4	-1.072e+01	0.0003	90.0	12.59%	3824.0	8.07%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-4	-1.070e+01	0.0003	41.0	5.73%	1337.5	2.82%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e-4	-1.069e+01	0.0003	46.0	6.43%	1572.1	3.32%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e-4	-1.035e+01	0.0004	50.0	6.99%	1788.6	3.78%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-4	-1.013e+01	0.0005	61.0	8.53%	2354.6	4.97%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e-4	-1.006e+01	0.0005	50.0	6.99%	1809.0	3.82%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-4	-9.987e+00	0.0005	134.0	18.74%	6372.2	13.45%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-4	-9.964e+00	0.0005	36.0	5.03%	1150.4	2.43%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-4	-9.918e+00	0.0005	44.0	6.15%	1528.2	3.23%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-4	-9.852e+00	0.0005	25.0	3.50%	674.5	1.42%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-4	-9.830e+00	0.0005	48.0	6.71%	1728.4	3.65%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-4	-9.532e+00	0.0007	7.0	0.98%	65.7	0.14%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e-4	-9.227e+00	0.0009	38.0	5.31%	1288.9	2.72%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-4	-9.216e+00	0.0009	44.0	6.15%	1577.6	3.33%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-3	-9.011e+00	0.0011	8.0	1.12%	96.0	0.20%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-3	-8.887e+00	0.0012	24.0	3.36%	675.5	1.43%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-3	-8.777e+00	0.0013	33.0	4.62%	1082.9	2.29%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-3	-8.746e+00	0.0013	26.0	3.64%	768.8	1.62%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-3	-8.515e+00	0.0016	63.0	8.81%	2605.3	5.50%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e-3	-8.403e+00	0.0017	9.0	1.26%	132.8	0.28%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-3	-8.386e+00	0.0017	18.0	2.52%	449.3	0.95%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e-3	-8.301e+00	0.0018	51.0	7.13%	2000.9	4.22%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-3	-8.095e+00	0.0022	29.0	4.06%	938.4	1.98%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-3	-7.620e+00	0.0035	39.0	5.45%	1450.4	3.06%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-3	-7.464e+00	0.0040	77.0	10.77%	3480.2	7.35%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e-3	-7.269e+00	0.0048	48.0	6.71%	1938.7	4.09%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e-3	-7.120e+00	0.0055	53.0	7.41%	2215.8	4.68%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-3	-7.087e+00	0.0055	6.0	0.84%	71.3	0.15%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e-3	-7.016e+00	0.0058	41.0	5.73%	1600.6	3.38%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e-3	-6.926e+00	0.0063	21.0	2.94%	641.9	1.36%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e-2	-6.737e+00	0.0074	32.0	4.48%	1171.6	2.47%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-2	-6.711e+00	0.0074	13.0	1.82%	314.3	0.66%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e-2	-6.711e+00	0.0074	13.0	1.82%	314.2	0.66%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-2	-6.673e+00	0.0075	67.0	9.37%	3024.6	6.39%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-2	-6.649e+00	0.0076	47.0	6.57%	1945.4	4.11%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-2	-6.466e+00	0.0090	31.0	4.34%	1142.9	2.41%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-2	-6.439e+00	0.0091	10.0	1.40%	210.9	0.45%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-2	-6.298e+00	0.0103	90.0	12.59%	4376.1	9.24%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e-2	-6.193e+00	0.0113	32.0	4.48%	1213.1	2.56%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-2	-6.076e+00	0.0125	46.0	6.43%	1950.3	4.12%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e-2	-6.064e+00	0.0125	43.0	6.01%	1792.7	3.78%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e-2	-6.045e+00	0.0125	38.0	5.31%	1532.1	3.23%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-2	-5.934e+00	0.0138	16.0	2.24%	471.5	1.00%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-2	-5.849e+00	0.0148	6.0	0.84%	91.8	0.19%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e-2	-5.807e+00	0.0152	55.0	7.69%	2468.1	5.21%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-2	-5.790e+00	0.0153	38.0	5.31%	1556.6	3.29%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e-2	-5.732e+00	0.0159	10.0	1.40%	232.5	0.49%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-2	-5.680e+00	0.0166	36.0	5.03%	1462.8	3.09%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-2	-5.627e+00	0.0172	59.0	8.25%	2712.9	5.73%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e-2	-5.575e+00	0.0179	42.0	5.87%	1789.0	3.78%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-2	-5.453e+00	0.0200	25.0	3.50%	923.0	1.95%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e-2	-5.435e+00	0.0201	35.0	4.90%	1433.3	3.03%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e-2	-5.357e+00	0.0215	21.0	2.94%	734.8	1.55%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-2	-5.274e+00	0.0230	47.0	6.57%	2093.8	4.42%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-2	-5.215e+00	0.0241	47.0	6.57%	2100.7	4.43%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-2	-5.077e+00	0.0274	35.0	4.90%	1468.7	3.10%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e-2	-4.970e+00	0.0301	11.0	1.54%	301.4	0.64%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-2	-4.749e+00	0.0371	21.0	2.94%	777.2	1.64%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e-2	-4.732e+00	0.0373	28.0	3.92%	1134.3	2.39%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e-2	-4.710e+00	0.0377	32.0	4.48%	1347.0	2.84%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-2	-4.654e+00	0.0394	11.0	1.54%	315.6	0.67%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-1	-4.581e+00	0.0419	35.0	4.90%	1520.5	3.21%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-1	-4.432e+00	0.0481	30.0	4.20%	1268.2	2.68%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-1	-4.413e+00	0.0485	30.0	4.20%	1270.5	2.68%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-1	-4.392e+00	0.0490	41.0	5.73%	1870.3	3.95%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-1	-4.363e+00	0.0499	13.0	1.82%	419.9	0.89%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-1	-4.308e+00	0.0521	20.0	2.80%	761.9	1.61%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e-1	-4.281e+00	0.0530	41.0	5.73%	1884.5	3.98%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-1	-4.231e+00	0.0551	179.0	25.03%	10213.3	21.56%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-1	-4.218e+00	0.0553	35.0	4.90%	1561.1	3.30%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-1	-3.957e+00	0.0710	86.0	12.03%	4554.2	9.61%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-1	-3.917e+00	0.0732	15.0	2.10%	542.6	1.15%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-1	-3.893e+00	0.0742	71.0	9.93%	3673.6	7.76%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e-1	-3.816e+00	0.0793	148.0	20.70%	8389.1	17.71%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e-1	-3.681e+00	0.0899	16.0	2.24%	609.0	1.29%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e-1	-3.587e+00	0.0978	15.0	2.10%	566.3	1.20%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-1	-3.566e+00	0.0990	30.0	4.20%	1364.0	2.88%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-1	-3.544e+00	0.1002	31.0	4.34%	1422.1	3.00%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e-1	-3.450e+00	0.1090	61.0	8.53%	3165.9	6.68%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e-1	-3.447e+00	0.1090	165.0	23.08%	9564.8	20.19%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e-1	-3.432e+00	0.1090	15.0	2.10%	578.1	1.22%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e-1	-3.427e+00	0.1090	14.0	1.96%	529.0	1.12%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e-1	-3.412e+00	0.1092	4.0	0.56%	79.6	0.17%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e-1	-3.394e+00	0.1101	31.0	4.34%	1441.7	3.04%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e-1	-3.315e+00	0.1180	10.0	1.40%	340.7	0.72%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-1	-3.237e+00	0.1265	5.0	0.70%	122.2	0.26%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e-1	-3.231e+00	0.1265	60.0	8.39%	3148.7	6.65%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-1	-3.195e+00	0.1297	26.0	3.64%	1188.6	2.51%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e-1	-3.150e+00	0.1345	30.0	4.20%	1417.6	2.99%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-1	-3.102e+00	0.1399	36.0	5.03%	1765.2	3.73%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e-1	-3.085e+00	0.1411	25.0	3.50%	1146.6	2.42%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-1	-2.955e+00	0.1592	33.0	4.62%	1615.8	3.41%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e-1	-2.918e+00	0.1640	60.0	8.39%	3212.7	6.78%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e-1	-2.872e+00	0.1702	51.0	7.13%	2683.0	5.66%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e-1	-2.793e+00	0.1827	37.0	5.17%	1872.7	3.95%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e-1	-2.769e+00	0.1856	12.0	1.68%	478.0	1.01%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e-1	-2.679e+00	0.2016	13.0	1.82%	538.9	1.14%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e-1	-2.677e+00	0.2016	66.0	9.23%	3629.0	7.66%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-1	-2.674e+00	0.2016	25.0	3.50%	1199.4	2.53%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-1	-2.566e+00	0.2202	11.0	1.54%	444.0	0.94%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e-1	-2.554e+00	0.2212	14.0	1.96%	603.7	1.27%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e-1	-2.532e+00	0.2243	3.0	0.42%	66.4	0.14%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-1	-2.381e+00	0.2590	11.0	1.54%	459.6	0.97%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e-1	-2.338e+00	0.2683	38.0	5.31%	2013.1	4.25%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-2.291e+00	0.2791	10.0	1.40%	414.9	0.88%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e0	-2.277e+00	0.2808	128.0	17.90%	7618.9	16.08%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-2.275e+00	0.2808	16.0	2.24%	743.9	1.57%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-2.255e+00	0.2828	47.0	6.57%	2572.7	5.43%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-2.226e+00	0.2889	68.0	9.51%	3867.9	8.17%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-2.167e+00	0.3042	10.0	1.40%	425.8	0.90%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e0	-2.143e+00	0.3095	6.0	0.84%	219.9	0.46%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-2.126e+00	0.3125	11.0	1.54%	483.4	1.02%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-2.124e+00	0.3125	5.0	0.70%	171.5	0.36%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-2.100e+00	0.3162	59.0	8.25%	3345.2	7.06%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-2.097e+00	0.3162	4.0	0.56%	125.4	0.26%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-2.080e+00	0.3179	71.0	9.93%	4095.6	8.65%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-2.067e+00	0.3200	6.0	0.84%	224.7	0.47%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-2.023e+00	0.3320	8.0	1.12%	331.5	0.70%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-2.020e+00	0.3320	71.0	9.93%	4113.7	8.68%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e0	-2.016e+00	0.3320	64.0	8.95%	3678.3	7.77%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-2.004e+00	0.3320	5.0	0.70%	178.9	0.38%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-1.989e+00	0.3342	115.0	16.08%	6900.8	14.57%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-1.984e+00	0.3342	79.0	11.05%	4625.0	9.76%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e0	-1.983e+00	0.3342	152.0	21.26%	9269.5	19.57%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-1.898e+00	0.3590	28.0	3.92%	1500.0	3.17%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-1.892e+00	0.3590	39.0	5.45%	2168.2	4.58%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-1.879e+00	0.3612	14.0	1.96%	679.2	1.43%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-1.867e+00	0.3631	40.0	5.59%	2235.2	4.72%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-1.837e+00	0.3717	42.0	5.87%	2365.7	4.99%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e0	-1.832e+00	0.3717	89.0	12.45%	5308.5	11.21%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-1.829e+00	0.3717	186.0	26.01%	11535.7	24.35%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-1.829e+00	0.3717	6.0	0.84%	241.8	0.51%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-1.801e+00	0.3756	28.0	3.92%	1519.3	3.21%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-1.793e+00	0.3763	26.0	3.64%	1400.7	2.96%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-1.771e+00	0.3823	44.0	6.15%	2505.7	5.29%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-1.763e+00	0.3831	46.0	6.43%	2631.1	5.55%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.758e+00	0.3831	4.0	0.56%	143.0	0.30%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.758e+00	0.3831	4.0	0.56%	143.0	0.30%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-1.741e+00	0.3844	9.0	1.26%	412.3	0.87%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e0	-1.739e+00	0.3844	53.0	7.41%	3073.8	6.49%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e0	-1.705e+00	0.3940	69.0	9.65%	4088.0	8.63%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-1.695e+00	0.3953	22.0	3.08%	1178.6	2.49%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e0	-1.695e+00	0.3953	17.0	2.38%	880.9	1.86%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-1.675e+00	0.3987	23.0	3.22%	1242.2	2.62%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-1.667e+00	0.3998	9.0	1.26%	420.0	0.89%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-1.658e+00	0.4008	1.0	0.14%	14.9	0.03%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-1.647e+00	0.4031	5.0	0.70%	202.7	0.43%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-1.644e+00	0.4031	23.0	3.22%	1248.8	2.64%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-1.637e+00	0.4031	16.0	2.24%	830.7	1.75%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e0	-1.624e+00	0.4055	19.0	2.66%	1011.6	2.14%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-1.607e+00	0.4100	5.0	0.70%	205.2	0.43%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-1.579e+00	0.4193	8.0	1.12%	373.5	0.79%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e0	-1.568e+00	0.4214	5.0	0.70%	208.1	0.44%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-1.567e+00	0.4214	3.0	0.42%	104.6	0.22%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-1.557e+00	0.4216	35.0	4.90%	2003.6	4.23%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-1.533e+00	0.4292	24.0	3.36%	1331.7	2.81%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-1.522e+00	0.4318	15.0	2.10%	789.7	1.67%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-1.468e+00	0.4532	9.0	1.26%	443.8	0.94%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-1.467e+00	0.4532	4.0	0.56%	162.2	0.34%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-1.466e+00	0.4532	79.0	11.05%	4811.3	10.16%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e0	-1.460e+00	0.4532	3.0	0.42%	110.5	0.23%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e0	-1.425e+00	0.4630	25.0	3.50%	1416.6	2.99%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-1.410e+00	0.4676	8.0	1.12%	392.4	0.83%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	-1.404e+00	0.4683	32.0	4.48%	1856.8	3.92%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-1.387e+00	0.4734	41.0	5.73%	2425.7	5.12%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-1.387e+00	0.4734	4.0	0.56%	168.4	0.36%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-1.375e+00	0.4744	12.0	1.68%	633.7	1.34%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-1.346e+00	0.4858	3.0	0.42%	117.8	0.25%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e0	-1.336e+00	0.4883	9.0	1.26%	460.2	0.97%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-1.332e+00	0.4883	26.0	3.64%	1500.1	3.17%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-1.328e+00	0.4883	55.0	7.69%	3332.5	7.04%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e0	-1.318e+00	0.4898	10.0	1.40%	522.0	1.10%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-1.304e+00	0.4941	11.0	1.54%	584.2	1.23%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-1.246e+00	0.5208	21.0	2.94%	1209.1	2.55%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-1.237e+00	0.5230	10.0	1.40%	534.8	1.13%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-1.233e+00	0.5230	6.0	0.84%	296.4	0.63%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-1.228e+00	0.5230	11.0	1.54%	596.3	1.26%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-1.212e+00	0.5285	13.0	1.82%	721.7	1.52%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-1.212e+00	0.5285	5.0	0.70%	240.7	0.51%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-1.201e+00	0.5290	3.0	0.42%	127.1	0.27%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-1.194e+00	0.5301	4.0	0.56%	184.0	0.39%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-1.176e+00	0.5375	20.0	2.80%	1163.0	2.46%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-1.157e+00	0.5450	1.0	0.14%	25.0	0.05%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-1.096e+00	0.5764	30.0	4.20%	1817.0	3.84%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-1.095e+00	0.5764	67.0	9.37%	4198.5	8.86%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-1.094e+00	0.5764	1.0	0.14%	27.4	0.06%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-1.094e+00	0.5764	1.0	0.14%	27.9	0.06%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e0	-1.092e+00	0.5764	23.0	3.22%	1373.5	2.90%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-1.089e+00	0.5764	7.0	0.98%	374.9	0.79%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-1.077e+00	0.5764	26.0	3.64%	1568.3	3.31%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-1.058e+00	0.5797	50.0	6.99%	3115.1	6.58%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e0	-1.045e+00	0.5845	23.0	3.22%	1386.6	2.93%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-1.040e+00	0.5851	7.0	0.98%	381.6	0.81%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-1.032e+00	0.5871	2.0	0.28%	83.3	0.18%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-1.027e+00	0.5871	3.0	0.42%	141.2	0.30%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-1.015e+00	0.5914	5.0	0.70%	262.6	0.55%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e0	-1.006e+00	0.5941	48.0	6.71%	3007.5	6.35%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-9.872e-01	0.6028	2.0	0.28%	86.9	0.18%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-9.791e-01	0.6050	15.0	2.10%	894.7	1.89%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-9.695e-01	0.6082	8.0	1.12%	454.2	0.96%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-9.526e-01	0.6158	73.0	10.21%	4658.8	9.84%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-9.324e-01	0.6257	52.0	7.27%	3299.7	6.97%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-9.317e-01	0.6257	2.0	0.28%	90.2	0.19%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-8.826e-01	0.6519	38.0	5.31%	2409.3	5.09%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-8.810e-01	0.6519	4.0	0.56%	217.7	0.46%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	-8.767e-01	0.6519	76.0	10.63%	4896.1	10.34%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-8.524e-01	0.6633	120.0	16.78%	7802.6	16.47%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-8.497e-01	0.6633	13.0	1.82%	797.8	1.68%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-8.470e-01	0.6633	23.0	3.22%	1446.3	3.05%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-8.437e-01	0.6633	5.0	0.70%	285.1	0.60%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-8.307e-01	0.6664	12.0	1.68%	737.6	1.56%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-8.289e-01	0.6664	34.0	4.76%	2170.2	4.58%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-8.120e-01	0.6734	47.0	6.57%	3029.4	6.40%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-8.076e-01	0.6735	75.0	10.49%	4871.7	10.28%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-7.985e-01	0.6769	14.0	1.96%	875.0	1.85%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-7.974e-01	0.6769	5.0	0.70%	292.6	0.62%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-7.757e-01	0.6868	7.0	0.98%	425.3	0.90%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-7.756e-01	0.6868	8.0	1.12%	490.5	1.04%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-7.748e-01	0.6868	4.0	0.56%	232.0	0.49%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-7.672e-01	0.6868	27.0	3.78%	1736.1	3.67%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-7.647e-01	0.6868	2.0	0.28%	104.2	0.22%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-7.551e-01	0.6870	10.0	1.40%	625.2	1.32%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-7.389e-01	0.6954	1.0	0.14%	43.5	0.09%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-6.965e-01	0.7227	55.0	7.69%	3618.5	7.64%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-6.937e-01	0.7227	3.0	0.42%	177.3	0.37%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-6.937e-01	0.7227	3.0	0.42%	177.9	0.38%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-6.771e-01	0.7281	14.0	1.96%	910.2	1.92%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-6.693e-01	0.7309	89.0	12.45%	5889.0	12.43%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-6.684e-01	0.7309	7.0	0.98%	447.9	0.95%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-6.644e-01	0.7309	29.0	4.06%	1911.1	4.03%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-6.553e-01	0.7326	71.0	9.93%	4705.1	9.93%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-6.473e-01	0.7357	47.0	6.57%	3116.4	6.58%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-6.371e-01	0.7404	33.0	4.62%	2190.5	4.62%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-6.230e-01	0.7480	3.0	0.42%	187.3	0.40%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-6.039e-01	0.7595	9.0	1.26%	597.6	1.26%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-5.983e-01	0.7608	2.0	0.28%	122.8	0.26%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-5.885e-01	0.7655	4.0	0.56%	261.4	0.55%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-5.842e-01	0.7658	3.0	0.42%	193.2	0.41%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-5.801e-01	0.7661	65.0	9.09%	4359.6	9.20%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e0	-5.552e-01	0.7824	10.0	1.40%	680.0	1.44%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-5.526e-01	0.7824	12.0	1.68%	816.4	1.72%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e0	-5.439e-01	0.7855	30.0	4.20%	2037.3	4.30%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-5.250e-01	0.7975	3.0	0.42%	203.3	0.43%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-4.925e-01	0.8208	3.0	0.42%	209.8	0.44%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-4.901e-01	0.8208	21.0	2.94%	1455.0	3.07%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-4.885e-01	0.8208	30.0	4.20%	2068.4	4.37%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-4.798e-01	0.8222	25.0	3.50%	1733.1	3.66%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-4.651e-01	0.8313	2.0	0.28%	141.6	0.30%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-4.634e-01	0.8313	13.0	1.82%	918.4	1.94%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-4.541e-01	0.8344	6.0	0.84%	432.7	0.91%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-4.446e-01	0.8394	92.0	12.87%	6286.5	13.27%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-4.427e-01	0.8394	3.0	0.42%	219.0	0.46%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-4.380e-01	0.8394	3.0	0.42%	220.9	0.47%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e0	-4.376e-01	0.8394	7.0	0.98%	509.0	1.07%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-4.208e-01	0.8474	5.0	0.70%	370.9	0.78%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-4.181e-01	0.8474	15.0	2.10%	1077.3	2.27%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-4.169e-01	0.8474	8.0	1.12%	586.7	1.24%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-4.109e-01	0.8474	73.0	10.21%	5040.2	10.64%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-3.988e-01	0.8541	29.0	4.06%	2056.2	4.34%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-3.876e-01	0.8608	2.0	0.28%	155.6	0.33%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-3.848e-01	0.8608	7.0	0.98%	526.8	1.11%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-3.826e-01	0.8608	2.0	0.28%	156.5	0.33%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-3.581e-01	0.8774	11.0	1.54%	824.4	1.74%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-3.454e-01	0.8855	7.0	0.98%	541.5	1.14%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	-3.421e-01	0.8855	1.0	0.14%	82.6	0.17%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-3.406e-01	0.8855	49.0	6.85%	3477.2	7.34%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-3.280e-01	0.8918	24.0	3.36%	1759.5	3.71%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e0	-3.154e-01	0.9001	10.0	1.40%	773.1	1.63%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-3.142e-01	0.9001	7.0	0.98%	554.2	1.17%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-3.057e-01	0.9028	13.0	1.82%	995.8	2.10%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-3.026e-01	0.9028	69.0	9.65%	4888.5	10.32%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-2.936e-01	0.9077	54.0	7.55%	3870.6	8.17%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e0	-2.895e-01	0.9083	17.0	2.38%	1292.2	2.73%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-2.864e-01	0.9083	1.0	0.14%	92.2	0.19%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-2.847e-01	0.9083	2.0	0.28%	179.8	0.38%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-2.811e-01	0.9083	13.0	1.82%	1010.1	2.13%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-2.752e-01	0.9093	11.0	1.54%	868.9	1.83%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-2.705e-01	0.9106	2.0	0.28%	184.0	0.39%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-2.673e-01	0.9106	21.0	2.94%	1594.5	3.37%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-2.557e-01	0.9181	27.0	3.78%	2030.5	4.29%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-2.334e-01	0.9358	4.0	0.56%	360.2	0.76%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-2.330e-01	0.9358	3.0	0.42%	279.1	0.59%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-2.214e-01	0.9410	128.0	17.90%	9038.2	19.08%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-2.213e-01	0.9410	1.0	0.14%	107.2	0.23%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-2.183e-01	0.9410	33.0	4.62%	2494.1	5.27%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-2.174e-01	0.9410	20.0	2.80%	1566.9	3.31%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-2.067e-01	0.9428	12.0	1.68%	989.4	2.09%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-2.018e-01	0.9444	2.0	0.28%	206.5	0.44%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-2.005e-01	0.9444	12.0	1.68%	994.2	2.10%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-1.984e-01	0.9444	45.0	6.29%	3366.5	7.11%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-1.882e-01	0.9483	11.0	1.54%	929.8	1.96%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-1.870e-01	0.9483	2.0	0.28%	212.4	0.45%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e0	-1.864e-01	0.9483	40.0	5.59%	3031.6	6.40%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-1.800e-01	0.9483	11.0	1.54%	936.6	1.98%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-1.606e-01	0.9627	2.0	0.28%	224.7	0.47%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-1.559e-01	0.9643	36.0	5.03%	2793.3	5.90%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-1.535e-01	0.9643	15.0	2.10%	1264.2	2.67%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-1.472e-01	0.9667	21.0	2.94%	1718.8	3.63%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-1.453e-01	0.9667	49.0	6.85%	3737.1	7.89%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	-1.438e-01	0.9667	1.0	0.14%	134.0	0.28%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-1.347e-01	0.9699	8.0	1.12%	745.3	1.57%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-1.272e-01	0.9742	14.0	1.96%	1220.4	2.58%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-1.257e-01	0.9742	6.0	0.84%	592.1	1.25%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-1.177e-01	0.9776	5.0	0.70%	516.3	1.09%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-1.111e-01	0.9811	1.0	0.14%	149.6	0.32%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-1.099e-01	0.9811	3.0	0.42%	348.1	0.73%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-1.075e-01	0.9811	3.0	0.42%	351.0	0.74%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e0	-9.782e-02	0.9853	2.0	0.28%	263.8	0.56%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-9.384e-02	0.9863	4.0	0.56%	453.9	0.96%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-9.180e-02	0.9863	10.0	1.40%	957.5	2.02%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-8.748e-02	0.9867	1.0	0.14%	164.7	0.35%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	-8.514e-02	0.9867	55.0	7.69%	4312.4	9.10%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-8.269e-02	0.9867	7.0	0.98%	725.7	1.53%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-7.529e-02	0.9900	47.0	6.57%	3768.8	7.96%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e0	-5.502e-02	1.0000	2.0	0.28%	308.0	0.65%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-4.202e-02	1.0000	4.0	0.56%	531.8	1.12%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-3.624e-02	1.0000	4.0	0.56%	546.0	1.15%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-3.385e-02	1.0000	53.0	7.41%	4399.2	9.29%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-3.151e-02	1.0000	11.0	1.54%	1184.0	2.50%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-2.522e-02	1.0000	1.0	0.14%	244.6	0.52%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	-1.270e-02	1.0000	50.0	6.99%	4391.5	9.27%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-4.135e-03	1.0000	8.0	1.12%	1148.0	2.42%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-1.490e-03	1.0000	5.0	0.70%	938.6	1.98%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-3.850e-04	1.0000	2.0	0.28%	677.2	1.43%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	0.000e+00	1.0000	0.0	0.00%	53.2	0.11%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	0.000e+00	1.0000	0.0	0.00%	18.9	0.04%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	0.000e+00	1.0000	0.0	0.00%	30.7	0.06%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	0.000e+00	1.0000	0.0	0.00%	28.8	0.06%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	0.000e+00	1.0000	0.0	0.00%	14.3	0.03%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	0.000e+00	1.0000	0.0	0.00%	24.5	0.05%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	0.000e+00	1.0000	0.0	0.00%	32.7	0.07%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	0.000e+00	1.0000	0.0	0.00%	178.3	0.38%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	0.000e+00	1.0000	0.0	0.00%	18.1	0.04%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	0.000e+00	1.0000	0.0	0.00%	1.7	0.00%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	0.000e+00	1.0000	0.0	0.00%	18.4	0.04%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	0.000e+00	1.0000	0.0	0.00%	34.0	0.07%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	0.000e+00	1.0000	0.0	0.00%	7.0	0.01%