Information for 21-GTGGRTCARGKAGAGG (Motif 42)

A C T G C G A T A C T G A C T G C T G A A C G T A T G C C G T A C T G A A C T G A C G T C T G A A C T G C G T A A C T G A C T G
Reverse Opposite:
A G T C G T A C A C G T A G T C A G C T G T C A A G T C A G C T C G A T A T C G C G T A A G C T A G T C A G T C C G T A A G T C
p-value:1e-6
log p-value:-1.439e+01
Information Content per bp:1.838
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.42%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets34.2 +/- 12.1bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RARA::RXRA/MA0159.1/Jaspar

Match Rank:1
Score:0.64
Offset:2
Orientation:forward strand
Alignment:GTGGRTCARGKAGAGG---
--AGGTCACGGAGAGGTCA
 A C T G C G A T A C T G A C T G C T G A A C G T A T G C C G T A C T G A A C T G A C G T C T G A A C T G C G T A A C T G A C T G A C G T A C G T A C G T
A C G T A C G T C T G A A C T G C A T G A C G T A T G C C T G A A G C T T A C G T C A G C T G A T A C G T C G A A C T G A C T G C A G T A T G C C G T A

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:2
Score:0.61
Offset:2
Orientation:forward strand
Alignment:GTGGRTCARGKAGAGG----
--RGGTCADNNAGAGGTCAV
 A C T G C G A T A C T G A C T G C T G A A C G T A T G C C G T A C T G A A C T G A C G T C T G A A C T G C G T A A C T G A C T G A C G T A C G T A C G T A C G T
A C G T A C G T C T G A C A T G A C T G A C G T A T G C C G T A C A T G T A C G A T G C G C T A T A C G C T G A C T A G A C T G A C G T A T G C C G T A T A G C

ZNF354C/MA0130.1/Jaspar

Match Rank:3
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:GTGGRTCARGKAGAGG
GTGGAT----------
 A C T G C G A T A C T G A C T G C T G A A C G T A T G C C G T A C T G A A C T G A C G T C T G A A C T G C G T A A C T G A C T G
A T C G A C G T A C T G A C T G C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:4
Score:0.56
Offset:2
Orientation:forward strand
Alignment:GTGGRTCARGKAGAGG
--AGGTCAAGGTCA--
 A C T G C G A T A C T G A C T G C T G A A C G T A T G C C G T A C T G A A C T G A C G T C T G A A C T G C G T A A C T G A C T G
A C G T A C G T T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A A C G T A C G T

ZNF263/MA0528.1/Jaspar

Match Rank:5
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-GTGGRTCARGKAGAGG----
GGAGGAGGAGGGGGAGGAGGA
 A C G T A C T G C G A T A C T G A C T G C T G A A C G T A T G C C G T A C T G A A C T G A C G T C T G A A C T G C G T A A C T G A C T G A C G T A C G T A C G T A C G T
C T A G C T A G C T G A C A T G T A C G G C T A C A T G T C A G T C G A T C A G C T A G C T A G C T A G T C A G C T G A C T A G C T A G C T G A C T A G C T A G C T G A

RARA(var.2)/MA0730.1/Jaspar

Match Rank:6
Score:0.54
Offset:2
Orientation:forward strand
Alignment:GTGGRTCARGKAGAGG---
--AGGTCATGCAAAGGTCA
 A C T G C G A T A C T G A C T G C T G A A C G T A T G C C G T A C T G A A C T G A C G T C T G A A C T G C G T A A C T G A C T G A C G T A C G T A C G T
A C G T A C G T T C G A A C T G A C T G A C G T G A T C T G C A G A C T A T C G A G T C C G T A T C G A T C G A C A T G A C T G A C G T A T G C C T G A

RHOXF1/MA0719.1/Jaspar

Match Rank:7
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:GTGGRTCARGKAGAGG
-NGGATTAN-------
 A C T G C G A T A C T G A C T G C T G A A C G T A T G C C G T A C T G A A C T G A C G T C T G A A C T G C G T A A C T G A C T G
A C G T C A T G C T A G A C T G G T C A A C G T G A C T G C T A C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:8
Score:0.53
Offset:2
Orientation:forward strand
Alignment:GTGGRTCARGKAGAGG
--AGGTCAAGGTCA--
 A C T G C G A T A C T G A C T G C T G A A C G T A T G C C G T A C T G A A C T G A C G T C T G A A C T G C G T A A C T G A C T G
A C G T A C G T C T G A C T A G A C T G G C A T A T G C C G T A C T G A C T A G A C T G A C G T A G T C C T G A A C G T A C G T

Rarb(var.2)/MA0858.1/Jaspar

Match Rank:9
Score:0.53
Offset:2
Orientation:forward strand
Alignment:GTGGRTCARGKAGAGG---
--AGGTCAACTAAAGGTCA
 A C T G C G A T A C T G A C T G C T G A A C G T A T G C C G T A C T G A A C T G A C G T C T G A A C T G C G T A A C T G A C T G A C G T A C G T A C G T
A C G T A C G T T C G A A T C G C A T G A G C T A T G C C T G A G T C A T G A C A G C T C G T A C T G A C T G A T A C G A C T G A C G T A G T C C T G A

PB0157.1_Rara_2/Jaspar

Match Rank:10
Score:0.50
Offset:-4
Orientation:forward strand
Alignment:----GTGGRTCARGKAGAGG
AGAGCGGGGTCAAGTA----
 A C G T A C G T A C G T A C G T A C T G C G A T A C T G A C T G C T G A A C G T A T G C C G T A C T G A A C T G A C G T C T G A A C T G C G T A A C T G A C T G
G T C A C A T G G T C A C A T G A G T C A T C G T A C G A C T G C A T G C G A T A G T C C T G A G T C A A C T G A C G T G T C A A C G T A C G T A C G T A C G T