Information for 2-AGCTAATTAC (Motif 3)

C G T A A C T G G A T C G C A T T C G A C G T A A G C T C G A T G T C A T G A C
Reverse Opposite:
A C T G C A G T G C T A T C G A C G A T A G C T C G T A C T A G T G A C G C A T
p-value:1e-20
log p-value:-4.773e+01
Information Content per bp:1.668
Number of Target Sequences with motif56.0
Percentage of Target Sequences with motif7.83%
Number of Background Sequences with motif771.5
Percentage of Background Sequences with motif1.63%
Average Position of motif in Targets47.7 +/- 22.8bp
Average Position of motif in Background51.1 +/- 30.3bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0045.1_Hoxa1/Jaspar

Match Rank:1
Score:0.85
Offset:-3
Orientation:forward strand
Alignment:---AGCTAATTAC---
CTGAGCTAATTACCGT
 A C G T A C G T A C G T C G T A A C T G G A T C G C A T T C G A C G T A A G C T C G A T G T C A T G A C A C G T A C G T A C G T
A G T C G A C T C T A G C T G A T C A G A T G C G A C T T G C A C G T A C G A T A C G T C T G A T G A C A G T C A C T G A G C T

PH0052.1_Hoxa5/Jaspar

Match Rank:2
Score:0.82
Offset:-3
Orientation:reverse strand
Alignment:---AGCTAATTAC---
NTGAGCTAATTACCNT
 A C G T A C G T A C G T C G T A A C T G G A T C G C A T T C G A C G T A A G C T C G A T G T C A T G A C A C G T A C G T A C G T
G A T C G C A T C A T G C G T A C T A G A T G C G A C T G T C A G T C A A C G T A C G T C T G A T G A C G A T C A C T G A G C T

PH0081.1_Pdx1/Jaspar

Match Rank:3
Score:0.82
Offset:-3
Orientation:reverse strand
Alignment:---AGCTAATTAC---
NTGNGCTAATTACCNN
 A C G T A C G T A C G T C G T A A C T G G A T C G C A T T C G A C G T A A G C T C G A T G T C A T G A C A C G T A C G T A C G T
G T C A G A C T A T C G C G T A C T A G A T G C G A C T T G C A G C T A C A G T A C G T C T G A T A G C G A T C A C G T A C G T

PH0049.1_Hoxa2/Jaspar

Match Rank:4
Score:0.82
Offset:-3
Orientation:reverse strand
Alignment:---AGCTAATTAC---
NTGAGCTAATTACCNT
 A C G T A C G T A C G T C G T A A C T G G A T C G C A T T C G A C G T A A G C T C G A T G T C A T G A C A C G T A C G T A C G T
G C T A G C A T C A T G C T G A C T A G A T G C G A C T T G C A G T C A A C G T A C G T C T G A T A G C G A T C A C G T G A C T

VAX2/MA0723.1/Jaspar

Match Rank:5
Score:0.81
Offset:2
Orientation:forward strand
Alignment:AGCTAATTAC
--CTAATTAC
 C G T A A C T G G A T C G C A T T C G A C G T A A G C T C G A T G T C A T G A C
A C G T A C G T A G T C G A C T G T C A G C T A C G A T C A G T C T G A A G T C

PH0024.1_Dlx5/Jaspar

Match Rank:6
Score:0.81
Offset:-3
Orientation:reverse strand
Alignment:---AGCTAATTAC---
NANNGNTAATTACCNN
 A C G T A C G T A C G T C G T A A C T G G A T C G C A T T C G A C G T A A G C T C G A T G T C A T G A C A C G T A C G T A C G T
A T G C T C G A A C T G T G C A T C A G A T G C G A C T G T C A C G T A G A C T C A G T C T G A A G T C A G T C A T G C T A G C

VAX1/MA0722.1/Jaspar

Match Rank:7
Score:0.81
Offset:2
Orientation:forward strand
Alignment:AGCTAATTAC
--CTAATTAC
 C G T A A C T G G A T C G C A T T C G A C G T A A G C T C G A T G T C A T G A C
A C G T A C G T A G T C G A C T G T C A G T C A C G A T C A G T C T G A G A T C

Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer

Match Rank:8
Score:0.81
Offset:1
Orientation:reverse strand
Alignment:AGCTAATTAC
-NCTAATTA-
 C G T A A C T G G A T C G C A T T C G A C G T A A G C T C G A T G T C A T G A C
A C G T T A C G A G T C A G C T G T C A C G T A A C G T A C G T C T G A A C G T

PH0074.1_Hoxd1/Jaspar

Match Rank:9
Score:0.80
Offset:-3
Orientation:reverse strand
Alignment:---AGCTAATTAC----
NNNAGCTAATTAGCTTA
 A C G T A C G T A C G T C G T A A C T G G A T C G C A T T C G A C G T A A G C T C G A T G T C A T G A C A C G T A C G T A C G T A C G T
C G A T G T C A G T A C T G C A T C A G A G T C G A C T T G C A C G T A C G A T A C G T C T G A T C A G A G C T C G A T A G C T G C T A

VSX2/MA0726.1/Jaspar

Match Rank:10
Score:0.80
Offset:2
Orientation:forward strand
Alignment:AGCTAATTAC
--CTAATTAG
 C G T A A C T G G A T C G C A T T C G A C G T A A G C T C G A T G T C A T G A C
A C G T A C G T A G T C G A C T G C T A T G C A G A C T G C A T C T G A A C T G