Information for 12-TCTTGGMAGGSTGAGT (Motif 19)

C G A T A T G C A G C T A C G T A T C G C A T G T G C A C G T A A T C G A C T G A T G C A G C T A C T G C G T A A C T G A C G T
Reverse Opposite:
G T C A A G T C G C A T A G T C C T G A T A C G A G T C T A G C A C G T A C G T G A T C A T G C C G T A C T G A A T C G C G T A
p-value:1e-10
log p-value:-2.515e+01
Information Content per bp:1.715
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.12%
Number of Background Sequences with motif11.9
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets48.0 +/- 12.6bp
Average Position of motif in Background52.2 +/- 22.5bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIA/MA0670.1/Jaspar

Match Rank:1
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:TCTTGGMAGGSTGAGT
NNTTGGCANN------
 C G A T A T G C A G C T A C G T A T C G C A T G T G C A C G T A A T C G A C T G A T G C A G C T A C T G C G T A A C T G A C G T
G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T A C G T A C G T A C G T A C G T A C G T

Stat5a::Stat5b/MA0519.1/Jaspar

Match Rank:2
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-TCTTGGMAGGSTGAGT
TTCTTGGAAAN------
 A C G T C G A T A T G C A G C T A C G T A T C G C A T G T G C A C G T A A T C G A C T G A T G C A G C T A C T G C G T A A C T G A C G T
A G C T C G A T A G T C G A C T C A G T C T A G C T A G C T G A C G T A T C G A G A C T A C G T A C G T A C G T A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:3
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:TCTTGGMAGGSTGAGT
-CTTGGCAA-------
 C G A T A T G C A G C T A C G T A T C G C A T G T G C A C G T A A T C G A C T G A T G C A G C T A C T G C G T A A C T G A C G T
A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:4
Score:0.54
Offset:2
Orientation:forward strand
Alignment:TCTTGGMAGGSTGAGT
--TTGGCA--------
 C G A T A T G C A G C T A C G T A T C G C A T G T G C A C G T A A T C G A C T G A T G C A G C T A C T G C G T A A C T G A C G T
A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:5
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:TCTTGGMAGGSTGAGT
-NTTGGCANN------
 C G A T A T G C A G C T A C G T A T C G C A T G T G C A C G T A A T C G A C T G A T G C A G C T A C T G C G T A A C T G A C G T
A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T A C G T A C G T A C G T A C G T

STAT3/MA0144.2/Jaspar

Match Rank:6
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--TCTTGGMAGGSTGAGT
CTTCTGGGAAA-------
 A C G T A C G T C G A T A T G C A G C T A C G T A T C G C A T G T G C A C G T A A T C G A C T G A T G C A G C T A C T G C G T A A C T G A C G T
A G T C C G A T A C G T G A T C G A C T C A T G C T A G C T A G C G T A C G T A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer

Match Rank:7
Score:0.53
Offset:-6
Orientation:forward strand
Alignment:------TCTTGGMAGGSTGAGT
NNNCTTTCCAGGAAA-------
 A C G T A C G T A C G T A C G T A C G T A C G T C G A T A T G C A G C T A C G T A T C G C A T G T G C A C G T A A T C G A C T G A T G C A G C T A C T G C G T A A C T G A C G T
G A C T C G A T T C A G G A T C G A C T A G C T A G C T A G T C G A T C C G T A C T A G C T A G T C G A T C G A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Stat4/MA0518.1/Jaspar

Match Rank:8
Score:0.52
Offset:-5
Orientation:reverse strand
Alignment:-----TCTTGGMAGGSTGAGT
NNNTTTCCTGGAAA-------
 A C G T A C G T A C G T A C G T A C G T C G A T A T G C A G C T A C G T A T C G C A T G T G C A C G T A A T C G A C T G A T G C A G C T A C T G C G T A A C T G A C G T
A G T C A T G C T C G A A G C T A C G T A C G T A G T C G A T C G A C T C T A G A C T G G T C A C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer

Match Rank:9
Score:0.51
Offset:-3
Orientation:reverse strand
Alignment:---TCTTGGMAGGSTGAGT
NCTTCCNGGAAGNN-----
 A C G T A C G T A C G T C G A T A T G C A G C T A C G T A T C G C A T G T G C A C G T A A T C G A C T G A T G C A G C T A C T G C G T A A C T G A C G T
T C A G A G T C G A C T A C G T G T A C A G T C C G A T C T A G C A T G G T C A C T G A T C A G A G C T T A C G A C G T A C G T A C G T A C G T A C G T

Bcl6/MA0463.1/Jaspar

Match Rank:10
Score:0.50
Offset:-2
Orientation:forward strand
Alignment:--TCTTGGMAGGSTGAGT
TTTCCTAGAAAGCA----
 A C G T A C G T C G A T A T G C A G C T A C G T A T C G C A T G T G C A C G T A A T C G A C T G A T G C A G C T A C T G C G T A A C T G A C G T
C A G T C G A T A G C T G T A C A G T C A C G T T C G A C T A G C T G A T C G A C T G A C A T G G T A C G C T A A C G T A C G T A C G T A C G T