Information for 7-ACAGCTCTCTTGAAAT (Motif 9)

C T G A A T G C C G T A A C T G G T A C C G A T A G T C C A G T A G T C C A G T A C G T C T A G C T G A C T G A G T C A A G C T
Reverse Opposite:
C T G A A C G T G A C T A G C T G A T C C G T A G C T A T A C G G C T A C T A G C G T A C A T G T G A C C G A T A T C G A G C T
p-value:1e-13
log p-value:-3.170e+01
Information Content per bp:1.700
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.82%
Number of Background Sequences with motif1.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets38.0 +/- 16.4bp
Average Position of motif in Background43.6 +/- 12.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0048.1_Hoxa13/Jaspar

Match Rank:1
Score:0.56
Offset:2
Orientation:forward strand
Alignment:ACAGCTCTCTTGAAAT--
--AAACCTCGTAAAATTT
 C T G A A T G C C G T A A C T G G T A C C G A T A G T C C A G T A G T C C A G T A C G T C T A G C T G A C T G A G T C A A G C T A C G T A C G T
A C G T A C G T G C T A C G T A G C T A A T C G T A G C A G C T G A T C C T A G A G C T C G T A C G T A G C T A G C T A G C A T A C G T C G A T

PH0068.1_Hoxc13/Jaspar

Match Rank:2
Score:0.55
Offset:2
Orientation:forward strand
Alignment:ACAGCTCTCTTGAAAT--
--AAAGCTCGTAAAATTT
 C T G A A T G C C G T A A C T G G T A C C G A T A G T C C A G T A G T C C A G T A C G T C T A G C T G A C T G A G T C A A G C T A C G T A C G T
A C G T A C G T G C A T G C T A C G T A A C T G T A G C A G C T G A T C C T A G A G C T C G T A C G T A C G T A G C T A G C A T A G C T C G A T

HOXC13/MA0907.1/Jaspar

Match Rank:3
Score:0.54
Offset:5
Orientation:forward strand
Alignment:ACAGCTCTCTTGAAAT
-----GCTCGTAAAAA
 C T G A A T G C C G T A A C T G G T A C C G A T A G T C C A G T A G T C C A G T A C G T C T A G C T G A C T G A G T C A A G C T
A C G T A C G T A C G T A C G T A C G T A C T G T A G C A G C T G A T C C T A G A C G T C G T A G C T A C G T A G C T A G C T A

PH0171.1_Nkx2-1/Jaspar

Match Rank:4
Score:0.50
Offset:1
Orientation:forward strand
Alignment:ACAGCTCTCTTGAAAT-
-TAAGCCACTTGAAATT
 C T G A A T G C C G T A A C T G G T A C C G A T A G T C C A G T A G T C C A G T A C G T C T A G C T G A C T G A G T C A A G C T A C G T
A C G T A G C T T C G A C T G A A T C G T A G C A G T C G C T A G T A C A C G T G A C T T C A G C G T A T G C A G T C A G C A T G C A T

PH0114.1_Nkx2-5/Jaspar

Match Rank:5
Score:0.49
Offset:1
Orientation:forward strand
Alignment:ACAGCTCTCTTGAAAT-
-TAAGCCACTTGAATTT
 C T G A A T G C C G T A A C T G G T A C C G A T A G T C C A G T A G T C C A G T A C G T C T A G C T G A C T G A G T C A A G C T A C G T
A C G T G A C T C T G A C T G A C A T G T A G C A G T C G C T A G T A C A C G T G A C T T C A G C G T A T C G A G C A T G A C T A G C T

PH0113.1_Nkx2-4/Jaspar

Match Rank:6
Score:0.49
Offset:1
Orientation:forward strand
Alignment:ACAGCTCTCTTGAAAT-
-TAAGCCACTTGAAATT
 C T G A A T G C C G T A A C T G G T A C C G A T A G T C C A G T A G T C C A G T A C G T C T A G C T G A C T G A G T C A A G C T A C G T
A C G T G C A T C G T A C G T A C T A G T A G C G A T C G C T A G T A C A C G T G A C T T C A G C G T A T G C A G C T A G C A T G A C T

Rhox11/MA0629.1/Jaspar

Match Rank:7
Score:0.49
Offset:-7
Orientation:reverse strand
Alignment:-------ACAGCTCTCTTGAAAT
TCNNTTTACAGCGNNNT------
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A A T G C C G T A A C T G G T A C C G A T A G T C C A G T A G T C C A G T A C G T C T A G C T G A C T G A G T C A A G C T
C G A T A G T C A T C G G A T C C G A T C G A T C G A T C G T A G A T C G C T A A T C G A G T C C T A G A C G T G T A C A C G T G C A T A C G T A C G T A C G T A C G T A C G T A C G T

PH0157.1_Rhox11_1/Jaspar

Match Rank:8
Score:0.49
Offset:-7
Orientation:reverse strand
Alignment:-------ACAGCTCTCTTGAAAT
TCNNTTTACAGCGNNNT------
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A A T G C C G T A A C T G G T A C C G A T A G T C C A G T A G T C C A G T A C G T C T A G C T G A C T G A G T C A A G C T
C G A T A G T C A T C G G A T C C G A T C G A T C G A T C G T A G A T C G C T A A T C G A G T C C T A G A C G T G T A C A C G T G C A T A C G T A C G T A C G T A C G T A C G T A C G T

PH0158.1_Rhox11_2/Jaspar

Match Rank:9
Score:0.49
Offset:-7
Orientation:reverse strand
Alignment:-------ACAGCTCTCTTGAAAT
TCNCTTTACAGCGNNNT------
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A A T G C C G T A A C T G G T A C C G A T A G T C C A G T A G T C C A G T A C G T C T A G C T G A C T G A G T C A A G C T
C G A T A G T C A T G C G A T C C G A T C G A T C G A T C G T A G A T C G C T A A T C G G A T C C T A G C A G T G T A C A G T C C G A T A C G T A C G T A C G T A C G T A C G T A C G T

MSC/MA0665.1/Jaspar

Match Rank:10
Score:0.48
Offset:-1
Orientation:reverse strand
Alignment:-ACAGCTCTCTTGAAAT
AACAGCTGTT-------
 A C G T C T G A A T G C C G T A A C T G G T A C C G A T A G T C C A G T A G T C C A G T A C G T C T A G C T G A C T G A G T C A A G C T
T C G A T C G A G T A C C G T A A T C G A T G C A C G T T A C G A C G T G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T