Information for 2-CVRGCTGGCA (Motif 3)

T A G C T C G A T C A G T A C G G A T C C A G T A C T G A T C G A G T C C T G A
Reverse Opposite:
G A C T A C T G A T G C A G T C G T C A C T A G A T G C A G T C A G C T A T C G
p-value:1e-19
log p-value:-4.551e+01
Information Content per bp:1.599
Number of Target Sequences with motif177.0
Percentage of Target Sequences with motif24.28%
Number of Background Sequences with motif5678.7
Percentage of Background Sequences with motif11.90%
Average Position of motif in Targets51.8 +/- 26.4bp
Average Position of motif in Background49.7 +/- 30.4bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.19
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hic1/MA0739.1/Jaspar

Match Rank:1
Score:0.87
Offset:2
Orientation:reverse strand
Alignment:CVRGCTGGCA-
--GGTTGGCAT
 T A G C T C G A T C A G T A C G G A T C C A G T A C T G A T C G A G T C C T G A A C G T
A C G T A C G T T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T

HIC2/MA0738.1/Jaspar

Match Rank:2
Score:0.84
Offset:2
Orientation:reverse strand
Alignment:CVRGCTGGCA-
--NGTGGGCAT
 T A G C T C G A T C A G T A C G G A T C C A G T A C T G A T C G A G T C C T G A A C G T
A C G T A C G T T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:3
Score:0.83
Offset:3
Orientation:reverse strand
Alignment:CVRGCTGGCA-
---CTTGGCAA
 T A G C T C G A T C A G T A C G G A T C C A G T A C T G A T C G A G T C C T G A A C G T
A C G T A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A

NFIX/MA0671.1/Jaspar

Match Rank:4
Score:0.83
Offset:3
Orientation:reverse strand
Alignment:CVRGCTGGCA--
---NTTGGCANN
 T A G C T C G A T C A G T A C G G A T C C A G T A C T G A T C G A G T C C T G A A C G T A C G T
A C G T A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

PB0029.1_Hic1_1/Jaspar

Match Rank:5
Score:0.82
Offset:-2
Orientation:reverse strand
Alignment:--CVRGCTGGCA----
NGTAGGTTGGCATNNN
 A C G T A C G T T A G C T C G A T C A G T A C G G A T C C A G T A C T G A T C G A G T C C T G A A C G T A C G T A C G T A C G T
C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T

NFIC/MA0161.1/Jaspar

Match Rank:6
Score:0.79
Offset:4
Orientation:forward strand
Alignment:CVRGCTGGCA
----TTGGCA
 T A G C T C G A T C A G T A C G G A T C C A G T A C T G A T C G A G T C C T G A
A C G T A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A

THAP1/MA0597.1/Jaspar

Match Rank:7
Score:0.79
Offset:2
Orientation:reverse strand
Alignment:CVRGCTGGCA-
--TNNGGGCAG
 T A G C T C G A T C A G T A C G G A T C C A G T A C T G A T C G A G T C C T G A A C G T
A C G T A C G T C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G

NFIA/MA0670.1/Jaspar

Match Rank:8
Score:0.76
Offset:2
Orientation:reverse strand
Alignment:CVRGCTGGCA--
--NNTTGGCANN
 T A G C T C G A T C A G T A C G G A T C C A G T A C T G A T C G A G T C C T G A A C G T A C G T
A C G T A C G T G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:9
Score:0.72
Offset:2
Orientation:reverse strand
Alignment:CVRGCTGGCA
--ARNTGACA
 T A G C T C G A T C A G T A C G G A T C C A G T A C T G A T C G A G T C C T G A
A C G T A C G T T G C A C T A G G A T C A C G T C T A G C G T A G T A C T C G A

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:10
Score:0.68
Offset:2
Orientation:forward strand
Alignment:CVRGCTGGCA--
--VGCTGWCAVB
 T A G C T C G A T C A G T A C G G A T C C A G T A C T G A T C G A G T C C T G A A C G T A C G T
A C G T A C G T T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C