Information for 8-AGCTAATTAA (Motif 21)

C G T A C A T G A T G C C A G T C T G A C T G A A C G T C A G T C G T A C G T A
Reverse Opposite:
C G A T A C G T G T C A C G T A A G C T G A C T G T C A T A C G G T A C A C G T
p-value:1e-9
log p-value:-2.075e+01
Information Content per bp:1.828
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif2.06%
Number of Background Sequences with motif119.0
Percentage of Background Sequences with motif0.25%
Average Position of motif in Targets64.5 +/- 23.2bp
Average Position of motif in Background49.0 +/- 32.5bp
Strand Bias (log2 ratio + to - strand density)1.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POU6F2/MA0793.1/Jaspar

Match Rank:1
Score:0.86
Offset:0
Orientation:forward strand
Alignment:AGCTAATTAA
AGCTCATTAT
 C G T A C A T G A T G C C A G T C T G A C T G A A C G T C A G T C G T A C G T A
C T G A T A C G G A T C C A G T G T A C G T C A A G C T A C G T G C T A G C A T

PH0074.1_Hoxd1/Jaspar

Match Rank:2
Score:0.84
Offset:-3
Orientation:reverse strand
Alignment:---AGCTAATTAA----
NNNAGCTAATTAGCTTA
 A C G T A C G T A C G T C G T A C A T G A T G C C A G T C T G A C T G A A C G T C A G T C G T A C G T A A C G T A C G T A C G T A C G T
C G A T G T C A G T A C T G C A T C A G A G T C G A C T T G C A C G T A C G A T A C G T C T G A T C A G A G C T C G A T A G C T G C T A

PH0001.1_Alx3/Jaspar

Match Rank:3
Score:0.84
Offset:-3
Orientation:reverse strand
Alignment:---AGCTAATTAA----
NTNAGCTAATTAGTTNA
 A C G T A C G T A C G T C G T A C A T G A T G C C A G T C T G A C T G A A C G T C A G T C G T A C G T A A C G T A C G T A C G T A C G T
A G T C C G A T A T G C T C G A C T A G G A T C A G C T G T C A C T G A A G C T A C G T C T G A C T A G A G C T C G A T A G C T G C T A

PH0045.1_Hoxa1/Jaspar

Match Rank:4
Score:0.84
Offset:-3
Orientation:forward strand
Alignment:---AGCTAATTAA---
CTGAGCTAATTACCGT
 A C G T A C G T A C G T C G T A C A T G A T G C C A G T C T G A C T G A A C G T C A G T C G T A C G T A A C G T A C G T A C G T
A G T C G A C T C T A G C T G A T C A G A T G C G A C T T G C A C G T A C G A T A C G T C T G A T G A C A G T C A C T G A G C T

LBX1/MA0618.1/Jaspar

Match Rank:5
Score:0.83
Offset:2
Orientation:reverse strand
Alignment:AGCTAATTAA
--CTAATTAA
 C G T A C A T G A T G C C A G T C T G A C T G A A C G T C A G T C G T A C G T A
A C G T A C G T T A G C A G C T G C T A C T G A A C G T A C G T C T G A G C T A

PB0031.1_Hoxa3_1/Jaspar

Match Rank:6
Score:0.83
Offset:-3
Orientation:forward strand
Alignment:---AGCTAATTAA-
TGGAGGTAATTAAC
 A C G T A C G T A C G T C G T A C A T G A T G C C A G T C T G A C T G A A C G T C A G T C G T A C G T A A C G T
C A G T A C T G A T C G G C T A C T A G A T C G G A C T G T C A C G T A A C G T A C G T C T G A T C G A A G T C

LHX2/MA0700.1/Jaspar

Match Rank:7
Score:0.83
Offset:1
Orientation:forward strand
Alignment:AGCTAATTAA-
-ACTAATTAAC
 C G T A C A T G A T G C C A G T C T G A C T G A A C G T C A G T C G T A C G T A A C G T
A C G T T C G A A G T C G A C T G T C A C T G A A C G T A C G T C T G A C T G A A T G C

mix-a/MA0621.1/Jaspar

Match Rank:8
Score:0.83
Offset:1
Orientation:reverse strand
Alignment:AGCTAATTAA--
-NCTAATTAANN
 C G T A C A T G A T G C C A G T C T G A C T G A A C G T C A G T C G T A C G T A A C G T A C G T
A C G T G T C A G A T C A C G T C G T A C G T A A C G T A C G T C G T A C T G A G A C T A C G T

PH0151.1_Pou6f1_1/Jaspar

Match Rank:9
Score:0.82
Offset:-3
Orientation:reverse strand
Alignment:---AGCTAATTAA----
NNNACCTCATTATCNTN
 A C G T A C G T A C G T C G T A C A T G A T G C C A G T C T G A C T G A A C G T C A G T C G T A C G T A A C G T A C G T A C G T A C G T
C A T G G A T C G T C A C G T A T A C G G T A C A C G T G T A C C G T A C G A T C G A T C G T A C G A T A T G C A C T G C G A T A G T C

Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer

Match Rank:10
Score:0.81
Offset:0
Orientation:forward strand
Alignment:AGCTAATTAA
ADBTAATTAR
 C G T A C A T G A T G C C A G T C T G A C T G A A C G T C A G T C G T A C G T A
C G T A C G T A A G C T G A C T T G C A G T C A A C G T A G C T C T G A T C A G