Information for 5-TTTTATGACT (Motif 6)

A G C T A C G T A C G T C G A T C G T A A C G T A C T G C G T A A G T C C G A T
Reverse Opposite:
C G T A A C T G A C G T A G T C C G T A A C G T C G T A C G T A C G T A C T G A
p-value:1e-16
log p-value:-3.779e+01
Information Content per bp:1.919
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif2.45%
Number of Background Sequences with motif48.8
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets45.3 +/- 28.2bp
Average Position of motif in Background50.5 +/- 28.2bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXC10/MA0905.1/Jaspar

Match Rank:1
Score:0.89
Offset:-1
Orientation:reverse strand
Alignment:-TTTTATGACT
NTTTTACGAC-
 A C G T A G C T A C G T A C G T C G A T C G T A A C G T A C T G C G T A A G T C C G A T
C G T A C G A T G C A T G C A T C G A T C G T A G A T C C A T G C T G A A G T C A C G T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:2
Score:0.89
Offset:-1
Orientation:reverse strand
Alignment:-TTTTATGACT
NTTTTATGAC-
 A C G T A G C T A C G T A C G T C G A T C G T A A C G T A C T G C G T A A G T C C G A T
C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C A C G T

PH0065.1_Hoxc10/Jaspar

Match Rank:3
Score:0.87
Offset:-3
Orientation:reverse strand
Alignment:---TTTTATGACT---
ANNTTTTACGACNTNN
 A C G T A C G T A C G T A G C T A C G T A C G T C G A T C G T A A C G T A C T G C G T A A G T C C G A T A C G T A C G T A C G T
T G C A T A G C C T A G G C A T C A G T C G A T C G A T C G T A A G T C A C T G C T G A A G T C G A C T G C A T G C A T C G T A

CDX2/MA0465.1/Jaspar

Match Rank:4
Score:0.86
Offset:0
Orientation:reverse strand
Alignment:TTTTATGACT-
TTTTATGGCTN
 A G C T A C G T A C G T C G A T C G T A A C G T A C T G C G T A A G T C C G A T A C G T
A G C T A C G T A C G T A C G T C G T A A C G T C A T G C T A G A G T C G A C T A G C T

PH0047.1_Hoxa11/Jaspar

Match Rank:5
Score:0.86
Offset:-3
Orientation:reverse strand
Alignment:---TTTTATGACT---
NNGTTTTACGACTTTA
 A C G T A C G T A C G T A G C T A C G T A C G T C G A T C G T A A C G T A C T G C G T A A G T C C G A T A C G T A C G T A C G T
G T C A G A C T C T A G C G A T C A G T C G A T C G A T C G T A A G T C C A T G C T G A A G T C G A C T C G A T G A C T C G T A

PH0066.1_Hoxc11/Jaspar

Match Rank:6
Score:0.85
Offset:-3
Orientation:reverse strand
Alignment:---TTTTATGACT---
NNNTTTTACGACNTTN
 A C G T A C G T A C G T A G C T A C G T A C G T C G A T C G T A A C G T A C T G C G T A A G T C C G A T A C G T A C G T A C G T
G T A C G A C T C T G A C G A T C G A T C G A T C G A T C G T A A G T C C A T G C T G A A G T C G A C T C G A T G A C T C T G A

HOXA10/MA0899.1/Jaspar

Match Rank:7
Score:0.84
Offset:-1
Orientation:reverse strand
Alignment:-TTTTATGACT
NTTTTATTACN
 A C G T A G C T A C G T A C G T C G A T C G T A A C G T A C T G C G T A A G T C C G A T
C A G T C A G T C A G T G C A T G C A T C G T A A G C T A C G T C T G A A G T C G A T C

HOXD11/MA0908.1/Jaspar

Match Rank:8
Score:0.84
Offset:-1
Orientation:reverse strand
Alignment:-TTTTATGACT
NTTTTACGAC-
 A C G T A G C T A C G T A C G T C G A T C G T A A C G T A C T G C G T A A G T C C G A T
C G A T C G A T C G A T C G A T C G A T C G T A A G T C C T A G C G T A A G T C A C G T

CDX1/MA0878.1/Jaspar

Match Rank:9
Score:0.83
Offset:0
Orientation:reverse strand
Alignment:TTTTATGACT
TTTTATTGC-
 A G C T A C G T A C G T C G A T C G T A A C G T A C T G C G T A A G T C C G A T
C A G T C G A T G C A T C G A T C G T A A G C T C A G T C T A G A G T C A C G T

PH0076.1_Hoxd11/Jaspar

Match Rank:10
Score:0.83
Offset:-4
Orientation:reverse strand
Alignment:----TTTTATGACT---
ANNATTTTACGACNTNA
 A C G T A C G T A C G T A C G T A G C T A C G T A C G T C G A T C G T A A C G T A C T G C G T A A G T C C G A T A C G T A C G T A C G T
G T C A C T A G C T A G C G T A C G A T C A G T C G A T C G A T C G T A A G T C C A T G C T G A A G T C A G T C G A C T C G A T C T G A