Information for 2-TGTGTCCYCTGGACAA (Motif 5)

A C G T C T A G A C G T A C T G A C G T A G T C T G A C G A T C G A T C A G C T A C T G A T C G G T C A A T G C G T C A C T G A
Reverse Opposite:
A G C T A C G T A T C G A C G T A T G C G T A C C T G A C A T G C T A G A C T G A C T G G T C A G T A C C G T A A G T C G T C A
p-value:1e-11
log p-value:-2.759e+01
Information Content per bp:1.745
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif1.27%
Number of Background Sequences with motif3.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets53.8 +/- 22.0bp
Average Position of motif in Background46.5 +/- 11.9bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:1
Score:0.59
Offset:2
Orientation:forward strand
Alignment:TGTGTCCYCTGGACAA
--TGGCACCATGCCAA
 A C G T C T A G A C G T A C T G A C G T A G T C T G A C G A T C G A T C A G C T A C T G A T C G G T C A A T G C G T C A C T G A
A C G T A C G T A C G T A C T G A C T G A G T C G C T A T A G C A T G C C T G A G C A T A C T G A G T C A G T C C G T A C G T A

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:2
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--TGTGTCCYCTGGACAA
NNTGTTTATTTTGGCA--
 A C G T A C G T A C G T C T A G A C G T A C T G A C G T A G T C T G A C G A T C G A T C A G C T A C T G A T C G G T C A A T G C G T C A C T G A
C G A T G A C T C G A T T C A G G A C T A C G T C A G T C T G A G A C T G A C T A G C T C G A T A C T G A T C G G T A C G C T A A C G T A C G T

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:3
Score:0.53
Offset:2
Orientation:forward strand
Alignment:TGTGTCCYCTGGACAA
--TGTCANYT------
 A C G T C T A G A C G T A C T G A C G T A G T C T G A C G A T C G A T C A G C T A C T G A T C G G T C A A T G C G T C A C T G A
A C G T A C G T A G C T C A T G G C A T G A T C T G C A C T A G G A T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PH0164.1_Six4/Jaspar

Match Rank:4
Score:0.52
Offset:-5
Orientation:reverse strand
Alignment:-----TGTGTCCYCTGGACAA
TNNNNGGTGTCATNTNT----
 A C G T A C G T A C G T A C G T A C G T A C G T C T A G A C G T A C T G A C G T A G T C T G A C G A T C G A T C A G C T A C T G A T C G G T C A A T G C G T C A C T G A
A G C T T C A G T C G A C A G T C T G A T C A G A C T G A C G T C T A G A C G T G T A C C T G A C G A T C A G T G A C T G T C A C A G T A C G T A C G T A C G T A C G T

Nr2f6(var.2)/MA0728.1/Jaspar

Match Rank:5
Score:0.51
Offset:2
Orientation:reverse strand
Alignment:TGTGTCCYCTGGACAA-
--TGACCTTTTGACCTC
 A C G T C T A G A C G T A C T G A C G T A G T C T G A C G A T C G A T C A G C T A C T G A T C G G T C A A T G C G T C A C T G A A C G T
A C G T A C G T A G C T C T A G C G T A G T A C A G T C A C G T G A C T G C A T C A G T T C A G G T C A A G T C A G T C G A C T A G T C

Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer

Match Rank:6
Score:0.51
Offset:-2
Orientation:reverse strand
Alignment:--TGTGTCCYCTGGACAA
NSTGTTTRCWCAGBNNN-
 A C G T A C G T A C G T C T A G A C G T A C T G A C G T A G T C T G A C G A T C G A T C A G C T A C T G A T C G G T C A A T G C G T C A C T G A
G A C T A T G C A C G T C T A G C G A T C A G T C A G T T C G A G A T C G C T A A G T C C G T A T C A G A T G C T A G C G A C T T A C G A C G T

bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer

Match Rank:7
Score:0.51
Offset:-1
Orientation:forward strand
Alignment:-TGTGTCCYCTGGACAA-
NAGTTTCABTHTGACTNW
 A C G T A C G T C T A G A C G T A C T G A C G T A G T C T G A C G A T C G A T C A G C T A C T G A T C G G T C A A T G C G T C A C T G A A C G T
A G T C C T G A A T C G A G C T A G C T G A C T A G T C G C T A A C G T C G A T G C A T C G A T A T C G C G T A T A G C G C A T A T G C C G T A

Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer

Match Rank:8
Score:0.51
Offset:-1
Orientation:forward strand
Alignment:-TGTGTCCYCTGGACAA
GTAGGTCACTGGGTCA-
 A C G T A C G T C T A G A C G T A C T G A C G T A G T C T G A C G A T C G A T C A G C T A C T G A T C G G T C A A T G C G T C A C T G A
A T C G A G C T C T G A C T A G A C T G A C G T G T A C G C T A A T G C A C G T C T A G C A T G T A C G C G A T A T G C C G T A A C G T

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:9
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:TGTGTCCYCTGGACAA-
-TTGGCANNNTGCCAAG
 A C G T C T A G A C G T A C T G A C G T A G T C T G A C G A T C G A T C A G C T A C T G A T C G G T C A A T G C G T C A C T G A A C G T
A C G T G A C T C A G T A C T G C T A G T G A C G C T A T A G C C G T A T A C G C G A T A C T G G A T C G T A C G T C A C T G A T C A G

PB0117.1_Eomes_2/Jaspar

Match Rank:10
Score:0.50
Offset:-5
Orientation:forward strand
Alignment:-----TGTGTCCYCTGGACAA
GCGGAGGTGTCGCCTC-----
 A C G T A C G T A C G T A C G T A C G T A C G T C T A G A C G T A C T G A C G T A G T C T G A C G A T C G A T C A G C T A C T G A T C G G T C A A T G C G T C A C T G A
T A C G A T C G T C A G C T A G C T G A T A C G A T C G A G C T T C A G C G A T G A T C A C T G T A G C A G T C A G C T T A G C A C G T A C G T A C G T A C G T A C G T