Information for 3-AATGGCAGGA (Motif 10)

C G T A T G C A A C G T C T A G A T C G G T A C C G T A A C T G T A C G C G T A
Reverse Opposite:
A C G T A T G C G T A C A C G T A C T G A T G C A G T C G T C A A C G T A C G T
p-value:1e-8
log p-value:-1.966e+01
Information Content per bp:1.852
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif3.44%
Number of Background Sequences with motif242.7
Percentage of Background Sequences with motif0.50%
Average Position of motif in Targets43.2 +/- 16.9bp
Average Position of motif in Background46.5 +/- 27.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YY2/MA0748.1/Jaspar

Match Rank:1
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-AATGGCAGGA
TAATGGCGGNC
 A C G T C G T A T G C A A C G T C T A G A T C G G T A C C G T A A C T G T A C G C G T A
G C A T C T G A C G T A G C A T C T A G A C T G A T G C T A C G C T A G G C T A G A T C

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.62
Offset:1
Orientation:forward strand
Alignment:AATGGCAGGA
-TTGCCAAG-
 C G T A T G C A A C G T C T A G A T C G G T A C C G T A A C T G T A C G C G T A
A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:3
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---AATGGCAGGA
BTGABTGACAGS-
 A C G T A C G T A C G T C G T A T G C A A C G T C T A G A T C G G T A C C G T A A C T G T A C G C G T A
A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C A C G T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---AATGGCAGGA
NTGATTGACAGN-
 A C G T A C G T A C G T C G T A T G C A A C G T C T A G A T C G G T A C C G T A A C T G T A C G C G T A
A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G A C G T

NFIC/MA0161.1/Jaspar

Match Rank:5
Score:0.61
Offset:1
Orientation:forward strand
Alignment:AATGGCAGGA
-TTGGCA---
 C G T A T G C A A C G T C T A G A T C G G T A C C G T A A C T G T A C G C G T A
A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T

THAP1/MA0597.1/Jaspar

Match Rank:6
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-AATGGCAGGA
TNNGGGCAG--
 A C G T C G T A T G C A A C G T C T A G A T C G G T A C C G T A A C T G T A C G C G T A
C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:7
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:AATGGCAGGA
NTTGGCANN-
 C G T A T G C A A C G T C T A G A T C G G T A C C G T A A C T G T A C G C G T A
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T

PB0195.1_Zbtb3_2/Jaspar

Match Rank:8
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----AATGGCAGGA-
CAATCACTGGCAGAAT
 A C G T A C G T A C G T A C G T A C G T C G T A T G C A A C G T C T A G A T C G G T A C C G T A A C T G T A C G C G T A A C G T
A G T C G C T A T C G A G C A T G T A C C T G A T G A C C G A T A C T G A C T G A G T C C T G A C T A G G C T A C G T A C G A T

E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer

Match Rank:9
Score:0.59
Offset:1
Orientation:forward strand
Alignment:AATGGCAGGA-
-CWGGCGGGAA
 C G T A T G C A A C G T C T A G A T C G G T A C C G T A A C T G T A C G C G T A A C G T
A C G T T A G C C G A T T A C G A C T G A G T C A C T G A T C G A T C G C G T A C T G A

Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:AATGGCAGGA-
-ATGGGGTGAT
 C G T A T G C A A C G T C T A G A T C G G T A C C G T A A C T G T A C G C G T A A C G T
A C G T T C G A A G C T C A T G A C T G A T C G T A C G G A C T A T C G C G T A A G C T