Information for 4-GSMMATCTTGGCWGAT (Motif 8)

A C T G T A G C T G A C T G A C C G T A C A G T A T G C C G A T A C G T C T A G A T C G A G T C C G A T A T C G C G T A C G A T
Reverse Opposite:
G C T A G C A T A T G C C G T A C T A G A T G C G A T C G T C A G C T A T A C G G C T A G C A T A C T G A C T G A T C G G T A C
p-value:1e-11
log p-value:-2.635e+01
Information Content per bp:1.646
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.42%
Number of Background Sequences with motif2.4
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets48.3 +/- 26.7bp
Average Position of motif in Background11.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0193.1_Tcfe2a_2/Jaspar

Match Rank:1
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---GSMMATCTTGGCWGAT
CCNNACCATCTGGCCTN--
 A C G T A C G T A C G T A C T G T A G C T G A C T G A C C G T A C A G T A T G C C G A T A C G T C T A G A T C G A G T C C G A T A T C G C G T A C G A T
A G T C T A G C T A C G C T A G T C G A G T A C A G T C C G T A A G C T T G A C A G C T C A T G A T C G G T A C G A T C A G C T C A G T A C G T A C G T

SREBF2/MA0596.1/Jaspar

Match Rank:2
Score:0.53
Offset:6
Orientation:forward strand
Alignment:GSMMATCTTGGCWGAT
------ATGGGGTGAT
 A C T G T A G C T G A C T G A C C G T A C A G T A T G C C G A T A C G T C T A G A T C G A G T C C G A T A T C G C G T A C G A T
A C G T A C G T A C G T A C G T A C G T A C G T T C G A A C G T A T C G C T A G A T C G T A C G A C G T A C T G C G T A A G C T

THAP1/MA0597.1/Jaspar

Match Rank:3
Score:0.53
Offset:5
Orientation:reverse strand
Alignment:GSMMATCTTGGCWGAT
-----TNNGGGCAG--
 A C T G T A G C T G A C T G A C C G T A C A G T A T G C C G A T A C G T C T A G A T C G A G T C C G A T A T C G C G T A C G A T
A C G T A C G T A C G T A C G T A C G T C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.53
Offset:6
Orientation:reverse strand
Alignment:GSMMATCTTGGCWGAT
------CTTGGCAA--
 A C T G T A G C T G A C T G A C C G T A C A G T A T G C C G A T A C G T C T A G A T C G A G T C C G A T A T C G C G T A C G A T
A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T

SREBF1/MA0595.1/Jaspar

Match Rank:5
Score:0.52
Offset:6
Orientation:reverse strand
Alignment:GSMMATCTTGGCWGAT
------GTGGGGTGAT
 A C T G T A G C T G A C T G A C C G T A C A G T A T G C C G A T A C G T C T A G A T C G A G T C C G A T A T C G C G T A C G A T
A C G T A C G T A C G T A C G T A C G T A C G T T C A G A C G T A T C G C T A G A T C G A T C G A C G T A C T G C G T A A G C T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:6
Score:0.52
Offset:0
Orientation:forward strand
Alignment:GSMMATCTTGGCWGAT
GTCATGCHTGRCTGS-
 A C T G T A G C T G A C T G A C C G T A C A G T A T G C C G A T A C G T C T A G A T C G A G T C C G A T A T C G C G T A C G A T
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C A C G T

NFIX/MA0671.1/Jaspar

Match Rank:7
Score:0.52
Offset:6
Orientation:reverse strand
Alignment:GSMMATCTTGGCWGAT
------NTTGGCANN-
 A C T G T A G C T G A C T G A C C G T A C A G T A T G C C G A T A C G T C T A G A T C G A G T C C G A T A T C G C G T A C G A T
A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T

NFIC/MA0161.1/Jaspar

Match Rank:8
Score:0.51
Offset:7
Orientation:forward strand
Alignment:GSMMATCTTGGCWGAT
-------TTGGCA---
 A C T G T A G C T G A C T G A C C G T A C A G T A T G C C G A T A C G T C T A G A T C G A G T C C G A T A T C G C G T A C G A T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:9
Score:0.51
Offset:5
Orientation:reverse strand
Alignment:GSMMATCTTGGCWGAT
-----NNTTGGCANN-
 A C T G T A G C T G A C T G A C C G T A C A G T A T G C C G A T A C G T C T A G A T C G A G T C C G A T A T C G C G T A C G A T
A C G T A C G T A C G T A C G T A C G T G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T

Myb/MA0100.2/Jaspar

Match Rank:10
Score:0.51
Offset:8
Orientation:reverse strand
Alignment:GSMMATCTTGGCWGAT--
--------TGGCAGTTGN
 A C T G T A G C T G A C T G A C C G T A C A G T A T G C C G A T A C G T C T A G A T C G A G T C C G A T A T C G C G T A C G A T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T A C T G C T A G A G T C C G T A A C T G A G C T A C G T C T A G T C A G