Information for 3-CACAGTCAGAAAA (Motif 8)

A G T C C G T A A G T C C G T A A T C G C G A T A G T C C G T A A C T G C G T A C G T A T C G A C G T A
Reverse Opposite:
C G A T A G C T A C G T A C G T A G T C A C G T A C T G C G T A A T G C A C G T A C T G A C G T A C T G
p-value:1e-10
log p-value:-2.419e+01
Information Content per bp:1.937
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.70%
Number of Background Sequences with motif3.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets62.0 +/- 23.5bp
Average Position of motif in Background56.4 +/- 5.8bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MAFK/MA0496.1/Jaspar

Match Rank:1
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CACAGTCAGAAAA--
CTGAGTCAGCAATTT
 A G T C C G T A A G T C C G T A A T C G C G A T A G T C C G T A A C T G C G T A C G T A T C G A C G T A A C G T A C G T
G T A C G C A T C T A G C G T A T A C G A G C T G T A C C G T A A C T G A T G C G C T A C G T A G C A T G C A T G C A T

PB0170.1_Sox17_2/Jaspar

Match Rank:2
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---CACAGTCAGAAAA-
GACCACATTCATACAAT
 A C G T A C G T A C G T A G T C C G T A A G T C C G T A A T C G C G A T A G T C C G T A A C T G C G T A C G T A T C G A C G T A A C G T
T A C G G C T A A G T C G T A C G T C A A G T C G C T A A G C T C G A T T G A C C T G A A G C T T C G A G A T C T C G A C G T A C G A T

PB0041.1_Mafb_1/Jaspar

Match Rank:3
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CACAGTCAGAAAA---
NCTANGTCAGCAAATTT
 A C G T A G T C C G T A A G T C C G T A A T C G C G A T A G T C C G T A A C T G C G T A C G T A T C G A C G T A A C G T A C G T A C G T
C A G T G A T C A G C T C G T A G C T A T C A G A C G T G T A C C G T A C A T G G A T C C G T A G T C A C G T A G C A T G A C T C G A T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:4
Score:0.59
Offset:4
Orientation:forward strand
Alignment:CACAGTCAGAAAA-
----GTCATAAAAN
 A G T C C G T A A G T C C G T A A T C G C G A T A G T C C G T A A C T G C G T A C G T A T C G A C G T A A C G T
A C G T A C G T A C G T A C G T T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T

MAFF/MA0495.1/Jaspar

Match Rank:5
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CACAGTCAGAAAA----
GCTGAGTCAGCAATTTTT
 A C G T A G T C C G T A A G T C C G T A A T C G C G A T A G T C C G T A A C T G C G T A C G T A T C G A C G T A A C G T A C G T A C G T A C G T
A T C G G T A C G C A T C T A G C G T A T A C G G C A T G T A C C G T A C A T G A G T C C G T A C G T A G C A T G C A T G C A T G A C T G C A T

PH0047.1_Hoxa11/Jaspar

Match Rank:6
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CACAGTCAGAAAA---
TAAAGTCGTAAAACAT
 A G T C C G T A A G T C C G T A A T C G C G A T A G T C C G T A A C T G C G T A C G T A T C G A C G T A A C G T A C G T A C G T
G C A T C T G A G C T A C T G A T C A G A G C T G T A C C T A G A C G T C G T A C G T A G C T A C G T A G A T C C T G A A C G T

PH0066.1_Hoxc11/Jaspar

Match Rank:7
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CACAGTCAGAAAA---
TAAAGTCGTAAAATAG
 A G T C C G T A A G T C C G T A A T C G C G A T A G T C C G T A A C T G C G T A C G T A T C G A C G T A A C G T A C G T A C G T
G A C T C T G A C G T A C T G A T C A G A G C T G A T C C T A G A C G T C G T A C G T A C G T A G C T A G A C T C T G A C A T G

PH0064.1_Hoxb9/Jaspar

Match Rank:8
Score:0.58
Offset:1
Orientation:forward strand
Alignment:CACAGTCAGAAAA----
-AGAGCCATAAAATTCG
 A G T C C G T A A G T C C G T A A T C G C G A T A G T C C G T A A C T G C G T A C G T A T C G A C G T A A C G T A C G T A C G T A C G T
A C G T T C A G T C A G T C G A A T C G G A T C G T A C C T G A G A C T C G T A C G T A C G T A C G T A G C A T G A C T G T A C C T A G

PH0065.1_Hoxc10/Jaspar

Match Rank:9
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CACAGTCAGAAAA---
TAAAGTCGTAAAACGT
 A G T C C G T A A G T C C G T A A T C G C G A T A G T C C G T A A C T G C G T A C G T A T C G A C G T A A C G T A C G T A C G T
G A C T C G T A C G T A C T G A T C A G A G C T G T A C C T A G A C G T C G T A C G T A G C T A C G T A G A T C A T C G A C G T

CDX2/MA0465.1/Jaspar

Match Rank:10
Score:0.57
Offset:2
Orientation:forward strand
Alignment:CACAGTCAGAAAA
--AAGCCATAAAA
 A G T C C G T A A G T C C G T A A T C G C G A T A G T C C G T A A C T G C G T A C G T A T C G A C G T A
A C G T A C G T T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A