Information for 2-RCCCCTGCRGAGCAGG (Motif 2)

C T G A A G T C A T G C A G T C A G T C A C G T A C T G A G T C C T A G A C T G C G T A A C T G A G T C C G T A A T C G T C A G
Reverse Opposite:
A G T C A T G C G C A T A C T G A G T C A C G T A G T C G A T C A C T G A G T C G T C A A C T G A C T G A T C G A C T G A G C T
p-value:1e-13
log p-value:-3.075e+01
Information Content per bp:1.827
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.70%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets45.7 +/- 19.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:1
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--RCCCCTGCRGAGCAGG
GGCCYCCTGCTGDGH---
 A C G T A C G T C T G A A G T C A T G C A G T C A G T C A C G T A C T G A G T C C T A G A C T G C G T A A C T G A G T C C G T A A T C G T C A G
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C A C G T A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:2
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:RCCCCTGCRGAGCAGG
CCCCCTGCTGTG----
 C T G A A G T C A T G C A G T C A G T C A C G T A C T G A G T C C T A G A C T G C G T A A C T G A G T C C G T A A T C G T C A G
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T A C G T A C G T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:3
Score:0.67
Offset:3
Orientation:forward strand
Alignment:RCCCCTGCRGAGCAGG
---CCTGCTGAGH---
 C T G A A G T C A T G C A G T C A G T C A C G T A C T G A G T C C T A G A C T G C G T A A C T G A G T C C G T A A T C G T C A G
A C G T A C G T A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A A C G T A C G T A C G T

ZIC4/MA0751.1/Jaspar

Match Rank:4
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--RCCCCTGCRGAGCAGG
GACCCCCCGCTGTGC---
 A C G T A C G T C T G A A G T C A T G C A G T C A G T C A C G T A C T G A G T C C T A G A C T G C G T A A C T G A G T C C G T A A T C G T C A G
A C T G T C G A G T A C G T A C G T A C G T A C G T A C G A T C C T A G A G T C C A G T C T A G G A C T A C T G G T A C A C G T A C G T A C G T

ZIC3/MA0697.1/Jaspar

Match Rank:5
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--RCCCCTGCRGAGCAGG
GACCCCCCGCTGCGC---
 A C G T A C G T C T G A A G T C A T G C A G T C A G T C A C G T A C T G A G T C C T A G A C T G C G T A A C T G A G T C C G T A A T C G T C A G
A C T G T C G A G T A C G A T C G T A C A G T C A G T C A G T C T C A G A G T C A C G T C A T G G A T C C A T G G T A C A C G T A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:6
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:RCCCCTGCRGAGCAGG
TCNCCTGCTGNGNNN-
 C T G A A G T C A T G C A G T C A G T C A C G T A C T G A G T C C T A G A C T G C G T A A C T G A G T C C G T A A T C G T C A G
G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:7
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:RCCCCTGCRGAGCAGG
TNTCCTGCTGTGNNG-
 C T G A A G T C A T G C A G T C A G T C A C G T A C T G A G T C C T A G A C T G C G T A A C T G A G T C C G T A A T C G T C A G
G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G A C G T

POL013.1_MED-1/Jaspar

Match Rank:8
Score:0.61
Offset:7
Orientation:reverse strand
Alignment:RCCCCTGCRGAGCAGG
-------CGGAGC---
 C T G A A G T C A T G C A G T C A G T C A C G T A C T G A G T C C T A G A C T G C G T A A C T G A G T C C G T A A T C G T C A G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A C T G A C T G C G T A A C T G A G T C A C G T A C G T A C G T

ZIC1/MA0696.1/Jaspar

Match Rank:9
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--RCCCCTGCRGAGCAGG
GACCCCCCGCTGTG----
 A C G T A C G T C T G A A G T C A T G C A G T C A G T C A C G T A C T G A G T C C T A G A C T G C G T A A C T G A G T C C G T A A T C G T C A G
A C T G T C G A G T A C G T A C G T A C A G T C G T A C G A T C T C A G A G T C A C G T T C A G G A C T A C T G A C G T A C G T A C G T A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:10
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:RCCCCTGCRGAGCAGG
NNTCCTGCTGTGNNN-
 C T G A A G T C A T G C A G T C A G T C A C G T A C T G A G T C C T A G A C T G C G T A A C T G A G T C C G T A A T C G T C A G
G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C A C G T