Information for 4-GYCAGAAATCATCCCA (Motif 17)

A C T G A G C T A G T C C G T A T A C G C T G A G T C A C G T A A C G T G T A C C G T A A C G T A T G C A G T C G T A C C G T A
Reverse Opposite:
G A C T A C T G T C A G A T C G C G T A C G A T A C T G G T C A C G A T A C G T A G C T A G T C C G A T C T A G C T G A G T A C
p-value:1e-9
log p-value:-2.148e+01
Information Content per bp:1.723
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.58%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets32.4 +/- 11.6bp
Average Position of motif in Background82.5 +/- 2.6bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0037.1_Hdx/Jaspar

Match Rank:1
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-GYCAGAAATCATCCCA
AAGGCGAAATCATCGCA
 A C G T A C T G A G C T A G T C C G T A T A C G C T G A G T C A C G T A A C G T G T A C C G T A A C G T A T G C A G T C G T A C C G T A
C G T A C T G A A C T G C A T G G T A C C T A G T G C A C G T A C G T A A C G T A T G C G C T A G A C T G A T C A T C G G T A C T G C A

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:2
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-GYCAGAAATCATCCCA
GGCCATAAATCA-----
 A C G T A C T G A G C T A G T C C G T A T A C G C T G A G T C A C G T A A C G T G T A C C G T A A C G T A T G C A G T C G T A C C G T A
C T A G T A C G G A T C G T A C C T G A A G C T T G C A G C T A C G T A G C A T G A T C G C T A A C G T A C G T A C G T A C G T A C G T

Hoxc9/MA0485.1/Jaspar

Match Rank:3
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GYCAGAAATCATCCCA
GGCCATAAATCAC----
 A C G T A C T G A G C T A G T C C G T A T A C G C T G A G T C A C G T A A C G T G T A C C G T A A C G T A T G C A G T C G T A C C G T A
C T A G T A C G G A T C G T A C C T G A A G C T T G C A C G T A G T C A C G A T G A T C G C T A A G T C A C G T A C G T A C G T A C G T

Hoxa9/MA0594.1/Jaspar

Match Rank:4
Score:0.60
Offset:0
Orientation:forward strand
Alignment:GYCAGAAATCATCCCA
GCCATAAATCA-----
 A C T G A G C T A G T C C G T A T A C G C T G A G T C A C G T A A C G T G T A C C G T A A C G T A T G C A G T C G T A C C G T A
T A C G G A T C G T A C T C G A A C G T T G C A G C T A G T C A C G A T G A T C G C T A A C G T A C G T A C G T A C G T A C G T

PH0125.1_Obox5_2/Jaspar

Match Rank:5
Score:0.60
Offset:2
Orientation:forward strand
Alignment:GYCAGAAATCATCCCA---
--GATAATTAATCCCTCTT
 A C T G A G C T A G T C C G T A T A C G C T G A G T C A C G T A A C G T G T A C C G T A A C G T A T G C A G T C G T A C C G T A A C G T A C G T A C G T
A C G T A C G T A C T G C G T A A G C T C T G A C G T A G C A T C G A T C G T A C G T A C A G T G T A C A G T C A G T C A G C T A G T C G A C T A G C T

PH0124.1_Obox5_1/Jaspar

Match Rank:6
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:GYCAGAAATCATCCCA---
--NANANTTAATCCCNNNN
 A C T G A G C T A G T C C G T A T A C G C T G A G T C A C G T A A C G T G T A C C G T A A C G T A T G C A G T C G T A C C G T A A C G T A C G T A C G T
A C G T A C G T C A T G C G T A C T G A C T G A C G A T G C A T C G A T C G T A C G T A C G A T G A T C A G T C A G T C A G C T A G T C G A C T C G T A

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:7
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-GYCAGAAATCATCCCA
GGCCATAAATCA-----
 A C G T A C T G A G C T A G T C C G T A T A C G C T G A G T C A C G T A A C G T G T A C C G T A A C G T A T G C A G T C G T A C C G T A
C T A G T A C G A G T C G T A C T C G A A C G T G T C A G C T A G C T A C G A T A G T C G C T A A C G T A C G T A C G T A C G T A C G T

PH0129.1_Otx1/Jaspar

Match Rank:8
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:GYCAGAAATCATCCCA---
--NNNAATTAATCCCCNCN
 A C T G A G C T A G T C C G T A T A C G C T G A G T C A C G T A A C G T G T A C C G T A A C G T A T G C A G T C G T A C C G T A A C G T A C G T A C G T
A C G T A C G T T C G A C G A T C G T A C G T A C T G A G A C T C G A T C G T A C G T A A C G T G A T C A G T C A T G C A G T C G C A T G T A C G A C T

PH0130.1_Otx2/Jaspar

Match Rank:9
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:GYCAGAAATCATCCCA---
--GANNATTAATCCCTNNN
 A C T G A G C T A G T C C G T A T A C G C T G A G T C A C G T A A C G T G T A C C G T A A C G T A T G C A G T C G T A C C G T A A C G T A C G T A C G T
A C G T A C G T C A T G G T C A G A T C C T G A T C G A G A C T C G A T C G T A C G T A C A G T G A T C A G T C A G T C A G C T G C T A G A T C G T C A

SREBF2/MA0596.1/Jaspar

Match Rank:10
Score:0.56
Offset:7
Orientation:reverse strand
Alignment:GYCAGAAATCATCCCA-
-------ATCACCCCAT
 A C T G A G C T A G T C C G T A T A C G C T G A G T C A C G T A A C G T G T A C C G T A A C G T A T G C A G T C G T A C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A A C G T A G T C C G T A A T G C T A G C A G T C A T G C C G T A A G C T