Information for 1-THCAGATGACTAH (Motif 2)

A C G T G C T A G T A C C T G A A C T G C T G A A C G T A C T G G T C A G T A C A G C T C G T A G C A T
Reverse Opposite:
C G T A A C G T C T G A A C T G A C G T A G T C C G T A A G C T G T A C A G C T C A T G C G A T C G T A
p-value:1e-13
log p-value:-3.065e+01
Information Content per bp:1.772
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif1.35%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets43.7 +/- 16.0bp
Average Position of motif in Background40.7 +/- 15.8bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:0.71
Offset:5
Orientation:forward strand
Alignment:THCAGATGACTAH--
-----ATGAATATTC
 A C G T G C T A G T A C C T G A A C T G C T G A A C G T A C T G G T C A G T A C A G C T C G T A G C A T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:2
Score:0.70
Offset:5
Orientation:forward strand
Alignment:THCAGATGACTAH--
-----ATGMATATDC
 A C G T G C T A G T A C C T G A A C T G C T G A A C G T A C T G G T C A G T A C A G C T C G T A G C A T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C

MAFG::NFE2L1/MA0089.1/Jaspar

Match Rank:3
Score:0.64
Offset:4
Orientation:forward strand
Alignment:THCAGATGACTAH
----CATGAC---
 A C G T G C T A G T A C C T G A A C T G C T G A A C G T A C T G G T C A G T A C A G C T C G T A G C A T
A C G T A C G T A C G T A C G T T A G C T C G A A C G T C A T G C G T A A G T C A C G T A C G T A C G T

PH0148.1_Pou3f3/Jaspar

Match Rank:4
Score:0.63
Offset:0
Orientation:forward strand
Alignment:THCAGATGACTAH----
AAAATATGCATAATAAA
 A C G T G C T A G T A C C T G A A C T G C T G A A C G T A C T G G T C A G T A C A G C T C G T A G C A T A C G T A C G T A C G T A C G T
G C T A G C T A C T A G C G T A G A C T G C T A G A C T C A T G G T A C C T G A C G A T C G T A G C T A C A G T C T G A C G T A C G T A

OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:5
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--THCAGATGACTAH
YATGCATATRCATRT
 A C G T A C G T A C G T G C T A G T A C C T G A A C T G C T G A A C G T A C T G G T C A G T A C A G C T C G T A G C A T
G A T C C G T A G A C T C T A G G A T C C T G A G A C T C T G A G A C T C T A G G A T C C T G A G A C T C T G A G A C T

BATF::JUN/MA0462.1/Jaspar

Match Rank:6
Score:0.59
Offset:2
Orientation:forward strand
Alignment:THCAGATGACTAH
--GAAATGACTCA
 A C G T G C T A G T A C C T G A A C T G C T G A A C G T A C T G G T C A G T A C A G C T C G T A G C A T
A C G T A C G T C T A G C T G A C G T A G T C A A C G T A C T G C G T A T A G C A C G T T G A C C G T A

OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:7
Score:0.58
Offset:5
Orientation:forward strand
Alignment:THCAGATGACTAH-------
-----ATGAATATTCATGAG
 A C G T G C T A G T A C C T G A A C T G C T G A A C G T A C T G G T C A G T A C A G C T C G T A G C A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C T A A C G T C T A G G T C A C G T A A C G T C G T A C G A T C A G T A G T C C G T A A C G T C T A G C T G A A T C G

Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer

Match Rank:8
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:THCAGATGACTAH---
----DATGASTCATNN
 A C G T G C T A G T A C C T G A A C T G C T G A A C G T A C T G G T C A G T A C A G C T C G T A G C A T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A T G T C G A C G A T C A T G G C T A T A G C C G A T G T A C G C T A A G C T G A T C T G A C

Bhlha15/MA0607.1/Jaspar

Match Rank:9
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:THCAGATGACTAH
-ACATATGG----
 A C G T G C T A G T A C C T G A A C T G C T G A A C G T A C T G G T C A G T A C A G C T C G T A G C A T
A C G T T C G A A G T C C G T A A C G T G T C A A C G T A C T G A T C G A C G T A C G T A C G T A C G T

JDP2/MA0655.1/Jaspar

Match Rank:10
Score:0.57
Offset:5
Orientation:forward strand
Alignment:THCAGATGACTAH-
-----ATGACTCAT
 A C G T G C T A G T A C C T G A A C T G C T G A A C G T A C T G G T C A G T A C A G C T C G T A G C A T A C G T
A C G T A C G T A C G T A C G T A C G T T C G A G A C T A C T G C G T A T A G C C A G T G T A C C G T A G A C T