Information for 7-CAGTGGCCACTGH (Motif 19)

A T G C C G T A C T A G A C G T A T C G A C T G A G T C A T G C T G C A A G T C C G A T A T C G G T C A
Reverse Opposite:
C A G T A T G C C G T A C T A G A C G T A T C G A C T G A G T C A T G C T C G A A G T C A C G T A T C G
p-value:1e-7
log p-value:-1.759e+01
Information Content per bp:1.802
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif1.35%
Number of Background Sequences with motif18.8
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets40.9 +/- 19.8bp
Average Position of motif in Background53.8 +/- 33.7bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL004.1_CCAAT-box/Jaspar

Match Rank:1
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-CAGTGGCCACTGH
TGATTGGCTANN--
 A C G T A T G C C G T A C T A G A C G T A T C G A C T G A G T C A T G C T G C A A G T C C G A T A T C G G T C A
A G C T A T C G G C T A G C A T A C G T C T A G T A C G G A T C G A C T C T G A T C A G C A G T A C G T A C G T

PB0118.1_Esrra_2/Jaspar

Match Rank:2
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--CAGTGGCCACTGH--
NNNNTTGACCCCTNNNN
 A C G T A C G T A T G C C G T A C T A G A C G T A T C G A C T G A G T C A T G C T G C A A G T C C G A T A T C G G T C A A C G T A C G T
C A T G T A G C T A G C G A T C C G A T A G C T T C A G G C T A G T A C G A T C A G T C A G T C C G A T T G A C T A C G G T A C A T G C

NFY(CCAAT)/Promoter/Homer

Match Rank:3
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--CAGTGGCCACTGH
CCGATTGGCT-----
 A C G T A C G T A T G C C G T A C T A G A C G T A T C G A C T G A G T C A T G C T G C A A G T C C G A T A T C G G T C A
A T G C A G T C A T C G C G T A A C G T A C G T A C T G A C T G G A T C A G C T A C G T A C G T A C G T A C G T A C G T

PB0099.1_Zfp691_1/Jaspar

Match Rank:4
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----CAGTGGCCACTGH
CGAACAGTGCTCACTAT
 A C G T A C G T A C G T A C G T A T G C C G T A C T A G A C G T A T C G A C T G A G T C A T G C T G C A A G T C C G A T A T C G G T C A
A G T C C A T G G C T A T C G A G A T C T C G A A C T G C G A T C T A G G T A C A G C T A G T C T G C A A G T C G C A T C T G A C G A T

FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer

Match Rank:5
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----CAGTGGCCACTGH
AGGTCANTGACCTN---
 A C G T A C G T A C G T A C G T A T G C C G T A C T A G A C G T A T C G A C T G A G T C A T G C T G C A A G T C C G A T A T C G G T C A
T C G A C A T G C A T G A C G T A T G C T C G A C T G A A G C T T A C G T G C A G T A C G A T C A G C T A G T C A C G T A C G T A C G T

PB0050.1_Osr1_1/Jaspar

Match Rank:6
Score:0.54
Offset:-5
Orientation:forward strand
Alignment:-----CAGTGGCCACTGH
ATTTACAGTAGCAAAA--
 A C G T A C G T A C G T A C G T A C G T A T G C C G T A C T A G A C G T A T C G A C T G A G T C A T G C T G C A A G T C C G A T A T C G G T C A
G C A T G C A T C G A T G C A T G T C A G A T C C T G A A C T G C G A T C T G A C T A G A G T C G C T A T G C A G C T A C T G A A C G T A C G T

PB0003.1_Ascl2_1/Jaspar

Match Rank:7
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:CAGTGGCCACTGH----
NNNNAGCAGCTGCTGAN
 A T G C C G T A C T A G A C G T A T C G A C T G A G T C A T G C T G C A A G T C C G A T A T C G G T C A A C G T A C G T A C G T A C G T
G T A C C G T A C T A G A C G T T C G A T C A G A G T C C G T A A T C G T A G C C G A T A C T G A G T C A G C T T C A G T G C A T C A G

PB0051.1_Osr2_1/Jaspar

Match Rank:8
Score:0.54
Offset:-5
Orientation:forward strand
Alignment:-----CAGTGGCCACTGH
ATGTACAGTAGCAAAG--
 A C G T A C G T A C G T A C G T A C G T A T G C C G T A C T A G A C G T A T C G A C T G A G T C A T G C T G C A A G T C C G A T A T C G G T C A
G C A T C G A T T C A G G C A T G T C A G A T C C T G A A C T G C G A T C T G A A C T G A G T C G C T A G T C A G C T A C T A G A C G T A C G T

ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:9
Score:0.53
Offset:3
Orientation:forward strand
Alignment:CAGTGGCCACTGH--
---RGGGCACTAACY
 A T G C C G T A C T A G A C G T A T C G A C T G A G T C A T G C T G C A A G T C C G A T A T C G G T C A A C G T A C G T
A C G T A C G T A C G T T C G A C A T G C A T G T A C G G T A C T C G A A G T C C A G T C T G A C G T A A G T C G A C T

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:10
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-CAGTGGCCACTGH
ACAAAGGNBCCT--
 A C G T A T G C C G T A C T A G A C G T A T C G A C T G A G T C A T G C T G C A A G T C C G A T A T C G G T C A
G C T A T A G C C G T A T C G A C G T A T C A G T A C G T C A G A G T C A G T C G A T C G C A T A C G T A C G T