Information for 1-CTCTTGAATA (Motif 8)

A G T C A C G T A T G C A G C T A G C T A C T G G T C A C G T A A G C T G T C A
Reverse Opposite:
A C G T C T G A A C G T A C G T A G T C C T G A C T G A A T C G C G T A C T A G
p-value:1e-9
log p-value:-2.302e+01
Information Content per bp:1.865
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif2.44%
Number of Background Sequences with motif83.6
Percentage of Background Sequences with motif0.17%
Average Position of motif in Targets56.2 +/- 20.7bp
Average Position of motif in Background52.5 +/- 25.9bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0178.1_Sox8_2/Jaspar

Match Rank:1
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---CTCTTGAATA-
NNTNTCATGAATGT
 A C G T A C G T A C G T A G T C A C G T A T G C A G C T A G C T A C T G G T C A C G T A A G C T G T C A A C G T
A T G C T A C G C A G T A C T G C G A T G A T C T G C A A G C T C T A G C G T A T C G A C G A T C T A G G A C T

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:2
Score:0.64
Offset:3
Orientation:forward strand
Alignment:CTCTTGAATA---
---ATGMATATDC
 A G T C A C G T A T G C A G C T A G C T A C T G G T C A C G T A A G C T G T C A A C G T A C G T A C G T
A C G T A C G T A C G T G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C

PB0068.1_Sox1_1/Jaspar

Match Rank:3
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--CTCTTGAATA----
NNNTATTGAATTGNNN
 A C G T A C G T A G T C A C G T A T G C A G C T A G C T A C T G G T C A C G T A A G C T G T C A A C G T A C G T A C G T A C G T
T G C A G C T A C A G T G C A T C G T A C G A T C G A T A T C G G C T A C G T A C G A T C G A T C T A G G T C A G C A T C G A T

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:4
Score:0.63
Offset:3
Orientation:forward strand
Alignment:CTCTTGAATA---
---ATGAATATTC
 A G T C A C G T A T G C A G C T A G C T A C T G G T C A C G T A A G C T G T C A A C G T A C G T A C G T
A C G T A C G T A C G T G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C

LIN54/MA0619.1/Jaspar

Match Rank:5
Score:0.62
Offset:1
Orientation:forward strand
Alignment:CTCTTGAATA
-ATTTGAATT
 A G T C A C G T A T G C A G C T A G C T A C T G G T C A C G T A A G C T G T C A
A C G T C G T A A C G T A C G T A G C T C T A G C G T A C G T A G A C T G A C T

OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:6
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:CTCTTGAATA-----
CTCATGAATATTCAT
 A G T C A C G T A T G C A G C T A G C T A C T G G T C A C G T A A G C T G T C A A C G T A C G T A C G T A C G T A C G T
T A G C G A C T G A T C C G T A A C G T T C A G G T C A C G T A A C G T C G T A C G A T A C G T A G T C C G T A C G A T

SCRT2/MA0744.1/Jaspar

Match Rank:7
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----CTCTTGAATA
CCACCTGTTGCAT-
 A C G T A C G T A C G T A C G T A G T C A C G T A T G C A G C T A G C T A C T G G T C A C G T A A G C T G T C A
T A G C G T A C C G T A A T G C A G T C A C G T C A T G A C G T A C G T A C T G T G A C C G T A A G C T A C G T

PH0111.1_Nkx2-2/Jaspar

Match Rank:8
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----CTCTTGAATA--
ATAACCACTTGAAAATT
 A C G T A C G T A C G T A C G T A C G T A G T C A C G T A T G C A G C T A G C T A C T G G T C A C G T A A G C T G T C A A C G T A C G T
G C A T C G A T T C G A C T G A T A G C A G T C G C T A G T A C C G A T A G C T T C A G C G T A T C G A C G T A C G T A A C G T C G A T

PB0170.1_Sox17_2/Jaspar

Match Rank:9
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--CTCTTGAATA-----
NTTNTATGAATGTGNNC
 A C G T A C G T A G T C A C G T A T G C A G C T A G C T A C T G G T C A C G T A A G C T G T C A A C G T A C G T A C G T A C G T A C G T
G C T A G C A T A G C T C T A G A G C T T C G A A G C T A C T G G C T A C T G A C G A T T C A G C A G T C A T G T C A G C G A T A T G C

PB0197.1_Zfp105_2/Jaspar

Match Rank:10
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-CTCTTGAATA------
ATGGTTCAATAATTTTG
 A C G T A G T C A C G T A T G C A G C T A G C T A C T G G T C A C G T A A G C T G T C A A C G T A C G T A C G T A C G T A C G T A C G T
C T A G A G C T C A T G T A C G A C G T A G C T T G A C T G C A T G C A A G C T T C G A C G T A A G C T C A G T A G C T A C G T C T A G