Information for 4-TCAATAGTTGAGG (Motif 6)

A C G T A G T C C G T A G T C A A C G T C G T A C A T G A C G T A C G T A T C G C G T A A C T G A C T G
Reverse Opposite:
A G T C G T A C A C G T A T G C C G T A G T C A G A T C A C G T T C G A A C G T C G A T A C T G C G T A
p-value:1e-10
log p-value:-2.435e+01
Information Content per bp:1.814
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif1.02%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets55.6 +/- 31.7bp
Average Position of motif in Background66.5 +/- 12.7bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.40
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nr2f6(var.2)/MA0728.1/Jaspar

Match Rank:1
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----TCAATAGTTGAGG
GAGGTCAAAAGGTCA--
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A G T C A A C G T C G T A C A T G A C G T A C G T A T C G C G T A A C T G A C T G
T C A G C T G A A C T G C T A G A C G T A G T C G T C A C G T A C T G A C G T A A C T G A C T G C G A T A G T C C T G A A C G T A C G T

POU4F1/MA0790.1/Jaspar

Match Rank:2
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-TCAATAGTTGAGG
ATGAATAATTAATG
 A C G T A C G T A G T C C G T A G T C A A C G T C G T A C A T G A C G T A C G T A T C G C G T A A C T G A C T G
T C G A G A C T C T A G G T C A G C T A C G A T C G T A C G T A C G A T C G A T C G T A T C G A G A C T C A T G

PB0197.1_Zfp105_2/Jaspar

Match Rank:3
Score:0.58
Offset:-5
Orientation:forward strand
Alignment:-----TCAATAGTTGAGG
ATGGTTCAATAATTTTG-
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A G T C A A C G T C G T A C A T G A C G T A C G T A T C G C G T A A C T G A C T G
C T A G A G C T C A T G T A C G A C G T A G C T T G A C T G C A T G C A A G C T T C G A C G T A A G C T C A G T A G C T A C G T C T A G A C G T

Rarg/MA0859.1/Jaspar

Match Rank:4
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----TCAATAGTTGAGG
AAGGTCAAAAGGTCAA-
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A G T C A A C G T C G T A C A T G A C G T A C G T A T C G C G T A A C T G A C T G
T C G A T C G A C T A G A C T G A C G T A G T C T C G A C G T A C T G A T C G A A C T G A C T G A C G T A G T C T C G A G C T A A C G T

POU4F3/MA0791.1/Jaspar

Match Rank:5
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-TCAATAGTTGAGG--
ATGCATAATTAATGAG
 A C G T A C G T A G T C C G T A G T C A A C G T C G T A C A T G A C G T A C G T A T C G C G T A A C T G A C T G A C G T A C G T
C T G A A G C T C A T G G T A C G C T A C G A T C G T A C G T A C G A T C G A T C G T A C T G A G A C T C A T G G T C A T C A G

Rarb/MA0857.1/Jaspar

Match Rank:6
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----TCAATAGTTGAGG
AAAGGTCAAAAGGTCA--
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A G T C A A C G T C G T A C A T G A C G T A C G T A T C G C G T A A C T G A C T G
G C T A C T G A T C G A A C T G A C T G C A G T A T G C C T G A G C T A C T G A C T G A C T A G A C T G A G C T A G T C C T G A A C G T A C G T

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:7
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-TCAATAGTTGAGG
ATGCATAATTCA--
 A C G T A C G T A G T C C G T A G T C A A C G T C G T A C A T G A C G T A C G T A T C G C G T A A C T G A C T G
G C T A C G A T C T A G G T A C G C T A C G A T C G T A G C T A C G A T C A G T G A T C G C T A A C G T A C G T

RARA/MA0729.1/Jaspar

Match Rank:8
Score:0.53
Offset:-4
Orientation:forward strand
Alignment:----TCAATAGTTGAGG-
GAGGTCAAAAGGTCAATG
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A G T C A A C G T C G T A C A T G A C G T A C G T A T C G C G T A A C T G A C T G A C G T
C T A G T C G A A C T G C A T G A G C T T A G C C T G A C G T A C G T A T G C A A C T G A C T G C G A T A G T C C T G A G C T A C A G T A C T G

POU4F2/MA0683.1/Jaspar

Match Rank:9
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-TCAATAGTTGAGG--
ATGCATAATTAATGAG
 A C G T A C G T A G T C C G T A G T C A A C G T C G T A C A T G A C G T A C G T A T C G C G T A A C T G A C T G A C G T A C G T
C T G A G A C T C T A G G T A C G C T A C G A T C G T A G C T A G C A T G C A T C T G A T C G A A C G T A C T G C T G A T C A G

SCRT2/MA0744.1/Jaspar

Match Rank:10
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--TCAATAGTTGAGG
ATGCAACAGGTGG--
 A C G T A C G T A C G T A G T C C G T A G T C A A C G T C G T A C A T G A C G T A C G T A T C G C G T A A C T G A C T G
T C G A G C A T A C T G G T A C T G C A C G T A G T A C G T C A T C A G A T C G G C A T C A T G A T C G A C G T A C G T