Information for 1-TGCAWGACAAAMC (Motif 1)

A C G T A C T G A G T C C G T A C G A T A C T G C G T A A G T C C G T A C G T A C G T A G T C A A G T C
Reverse Opposite:
A C T G A C G T C G A T A C G T A C G T A C T G G C A T G T A C C G T A A C G T A C T G A G T C C G T A
p-value:1e-14
log p-value:-3.420e+01
Information Content per bp:1.914
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif1.22%
Number of Background Sequences with motif0.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets50.8 +/- 20.6bp
Average Position of motif in Background33.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:1
Score:0.71
Offset:-3
Orientation:reverse strand
Alignment:---TGCAWGACAAAMC
ATTTGCATAACAAAG-
 A C G T A C G T A C G T A C G T A C T G A G T C C G T A C G A T A C T G C G T A A G T C C G T A C G T A C G T A G T C A A G T C
G T C A G A C T G A C T G C A T T C A G T G A C G C T A C G A T C T G A G C T A A T G C G T C A T C G A C G T A T C A G A C G T

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:2
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---TGCAWGACAAAMC
ATTTGCATAACAATG-
 A C G T A C G T A C G T A C G T A C T G A G T C C G T A C G A T A C T G C G T A A G T C C G T A C G T A C G T A G T C A A G T C
G C T A G C A T G A C T G C A T T C A G G T A C G C T A G C A T C T G A G C T A T A G C G C T A C T G A C G A T C T A G A C G T

PB0032.1_IRC900814_1/Jaspar

Match Rank:3
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-TGCAWGACAAAMC--
ATTTACGACAAATAGC
 A C G T A C G T A C T G A G T C C G T A C G A T A C T G C G T A A G T C C G T A C G T A C G T A G T C A A G T C A C G T A C G T
C G T A C G A T G A C T A G C T G C T A A G T C A C T G C T G A T G A C C T G A C G T A G C T A G C A T C G T A C T A G A G T C

PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:4
Score:0.58
Offset:0
Orientation:forward strand
Alignment:TGCAWGACAAAMC--
ACCGTGACTAATTNN
 A C G T A C T G A G T C C G T A C G A T A C T G C G T A A G T C C G T A C G T A C G T A G T C A A G T C A C G T A C G T
C G T A T A G C A G T C C T A G C A G T C T A G C T G A G T A C G C A T T C G A C G T A G C A T A G C T C T A G T C G A

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---TGCAWGACAAAMC
AGGTGHCAGACA----
 A C G T A C G T A C G T A C G T A C T G A G T C C G T A C G A T A C T G C G T A A G T C C G T A C G T A C G T A G T C A A G T C
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T A C G T A C G T

MEIS1/MA0498.2/Jaspar

Match Rank:6
Score:0.57
Offset:3
Orientation:forward strand
Alignment:TGCAWGACAAAMC
---TTGACAG---
 A C G T A C T G A G T C C G T A C G A T A C T G C G T A A G T C C G T A C G T A C G T A G T C A A G T C
A C G T A C G T A C G T G C A T G C A T A T C G T G C A A G T C C T G A C T A G A C G T A C G T A C G T

PB0123.1_Foxl1_2/Jaspar

Match Rank:7
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--TGCAWGACAAAMC-
ATATCAAAACAAAACA
 A C G T A C G T A C G T A C T G A G T C C G T A C G A T A C T G C G T A A G T C C G T A C G T A C G T A G T C A A G T C A C G T
G C T A C G A T C G T A C G A T G A T C G C T A G C T A G T C A C G T A A G T C C G T A C G T A G T C A C G T A G T A C G T C A

Sox3/MA0514.1/Jaspar

Match Rank:8
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:TGCAWGACAAAMC
---AAAACAAAGG
 A C G T A C T G A G T C C G T A C G A T A C T G C G T A A G T C C G T A C G T A C G T A G T C A A G T C
A C G T A C G T A C G T T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G

MAFG::NFE2L1/MA0089.1/Jaspar

Match Rank:9
Score:0.56
Offset:2
Orientation:forward strand
Alignment:TGCAWGACAAAMC
--CATGAC-----
 A C G T A C T G A G T C C G T A C G A T A C T G C G T A A G T C C G T A C G T A C G T A G T C A A G T C
A C G T A C G T T A G C T C G A A C G T C A T G C G T A A G T C A C G T A C G T A C G T A C G T A C G T

Pax2/MA0067.1/Jaspar

Match Rank:10
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:TGCAWGACAAAMC
-NCGTGACN----
 A C G T A C T G A G T C C G T A C G A T A C T G C G T A A G T C C G T A C G T A C G T A G T C A A G T C
A C G T T A C G G T A C C T A G A G C T T C A G C G T A G A T C C G A T A C G T A C G T A C G T A C G T