Information for 9-ACCTRATSAGGCT (Motif 19)

G T C A G T A C A G T C A C G T C T G A G T C A C A G T A T C G C G T A A C T G C T A G A G T C C G A T
Reverse Opposite:
C G T A A C T G A G T C A G T C A C G T T A G C G T C A A C G T A G C T C G T A A C T G A C T G A C G T
p-value:1e-8
log p-value:-1.938e+01
Information Content per bp:1.786
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif1.21%
Number of Background Sequences with motif12.3
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets44.0 +/- 27.5bp
Average Position of motif in Background49.5 +/- 35.3bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0094.1_Lhx4/Jaspar

Match Rank:1
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---ACCTRATSAGGCT-
CAAAGCTAATTAGNTTN
 A C G T A C G T A C G T G T C A G T A C A G T C A C G T C T G A G T C A C A G T A T C G C G T A A C T G C T A G A G T C C G A T A C G T
G A T C T G C A G C T A T G C A T A C G A T G C G A C T T C G A C T G A A G C T A G C T C T G A A T C G A G C T G C A T C A G T G T C A

PH0152.1_Pou6f1_2/Jaspar

Match Rank:2
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--ACCTRATSAGGCT--
AAACATAATGAGGTTGC
 A C G T A C G T G T C A G T A C A G T C A C G T C T G A G T C A C A G T A T C G C G T A A C T G C T A G A G T C C G A T A C G T A C G T
T C G A G T C A G C T A T A G C G C T A C G A T C G T A C G T A A C G T C A T G C G T A A C T G T A C G G C A T C A G T A C T G G T A C

PH0098.1_Lhx8/Jaspar

Match Rank:3
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---ACCTRATSAGGCT-
CACCGCTAATTAGNNGN
 A C G T A C G T A C G T G T C A G T A C A G T C A C G T C T G A G T C A C A G T A T C G C G T A A C T G C T A G A G T C C G A T A C G T
G A T C T G C A G T A C G T A C T C A G T G A C G A C T T C G A C T G A A G C T A G C T C T G A A C T G A C T G A C T G A C T G C G A T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:4
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--ACCTRATSAGGCT
CCCCCTGCTGTG---
 A C G T A C G T G T C A G T A C A G T C A C G T C T G A G T C A C A G T A T C G C G T A A C T G C T A G A G T C C G A T
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T A C G T A C G T

CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer

Match Rank:5
Score:0.59
Offset:1
Orientation:forward strand
Alignment:ACCTRATSAGGCT
-CCATATATGGNA
 G T C A G T A C A G T C A C G T C T G A G T C A C A G T A T C G C G T A A C T G C T A G A G T C C G A T
A C G T A T G C A G T C G C T A C G A T C G T A G C A T G C T A C G A T C T A G C A T G T G A C G T C A

Lhx8/MA0705.1/Jaspar

Match Rank:6
Score:0.59
Offset:2
Orientation:forward strand
Alignment:ACCTRATSAGGCT
--CTAATTAG---
 G T C A G T A C A G T C A C G T C T G A G T C A C A G T A T C G C G T A A C T G C T A G A G T C C G A T
A C G T A C G T A G T C A G C T T C G A C G T A A C G T A G C T C T G A T C A G A C G T A C G T A C G T

PH0089.1_Isx/Jaspar

Match Rank:7
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--ACCTRATSAGGCT-
ACNNCTAATTAGNNNN
 A C G T A C G T G T C A G T A C A G T C A C G T C T G A G T C A C A G T A T C G C G T A A C T G C T A G A G T C C G A T A C G T
G C T A A T G C T A C G T G C A G A T C A G C T G C T A C G T A C G A T C A G T C T G A C T A G A C T G C T G A A C T G C G A T

LHX6/MA0658.1/Jaspar

Match Rank:8
Score:0.58
Offset:1
Orientation:forward strand
Alignment:ACCTRATSAGGCT
-ACTAATTAGC--
 G T C A G T A C A G T C A C G T C T G A G T C A C A G T A T C G C G T A A C T G C T A G A G T C C G A T
A C G T T C G A A G T C A G C T T C G A G T C A A G C T A G C T C T G A T C A G A G T C A C G T A C G T

PH0151.1_Pou6f1_1/Jaspar

Match Rank:9
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--ACCTRATSAGGCT--
GACGATAATGAGCTTGC
 A C G T A C G T G T C A G T A C A G T C A C G T C T G A G T C A C A G T A T C G C G T A A C T G C T A G A G T C C G A T A C G T A C G T
T A C G G C T A T G A C T A C G G C T A C G A T C G T A C G T A A C G T C A T G C G T A A C T G A T C G G C A T C A G T C T A G G T A C

PH0097.1_Lhx6_2/Jaspar

Match Rank:10
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---ACCTRATSAGGCT-
NNNCGCTAATTAGNNGA
 A C G T A C G T A C G T G T C A G T A C A G T C A C G T C T G A G T C A C A G T A T C G C G T A A C T G C T A G A G T C C G A T A C G T
T G C A G C T A G A T C G T A C T C A G G A T C G A C T T C G A C T G A A G C T A G C T C T G A C T A G A G C T C A T G A C T G C G T A