Information for 1-CATAGTCTAT (Motif 13)

T G A C T G C A G C A T T C G A C A T G G C A T A G T C A G C T C T G A C G A T
Reverse Opposite:
C G T A G A C T C T G A T C A G C G T A G T A C A G C T C G T A A C G T A C T G
p-value:1e-10
log p-value:-2.409e+01
Information Content per bp:1.679
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif3.23%
Number of Background Sequences with motif167.8
Percentage of Background Sequences with motif0.34%
Average Position of motif in Targets49.2 +/- 30.6bp
Average Position of motif in Background48.8 +/- 28.7bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:1
Score:0.63
Offset:2
Orientation:forward strand
Alignment:CATAGTCTAT
--TWGTCTGV
 T G A C T G C A G C A T T C G A C A T G G C A T A G T C A G C T C T G A C G A T
A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G

PB0134.1_Hnf4a_2/Jaspar

Match Rank:2
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---CATAGTCTAT---
GGCAAAAGTCCAATAA
 A C G T A C G T A C G T T G A C T G C A G C A T T C G A C A T G G C A T A G T C A G C T C T G A C G A T A C G T A C G T A C G T
A C G T A C G T G A T C G T A C C G T A C T G A C T G A A C T G A C G T G T A C A G T C C T G A G T C A C G A T G T C A G C A T

Foxq1/MA0040.1/Jaspar

Match Rank:3
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CATAGTCTAT-
TATTGTTTATT
 T G A C T G C A G C A T T C G A C A T G G C A T A G T C A G C T C T G A C G A T A C G T
G A C T C T G A G C A T C G A T A C T G A C G T A C G T A C G T C T G A A C G T C G A T

CUX1/MA0754.1/Jaspar

Match Rank:4
Score:0.58
Offset:2
Orientation:forward strand
Alignment:CATAGTCTAT--
--TAATCGATAA
 T G A C T G C A G C A T T C G A C A T G G C A T A G T C A G C T C T G A C G A T A C G T A C G T
A C G T A C G T G A C T C T G A C T G A A G C T A G T C T C A G C G T A G C A T T G C A G T C A

CUX2/MA0755.1/Jaspar

Match Rank:5
Score:0.58
Offset:2
Orientation:forward strand
Alignment:CATAGTCTAT--
--TAATCGATAA
 T G A C T G C A G C A T T C G A C A T G G C A T A G T C A G C T C T G A C G A T A C G T A C G T
A C G T A C G T G C A T C T G A C T G A A G C T A G T C C T A G C G T A G C A T G C T A G C T A

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:6
Score:0.55
Offset:-7
Orientation:forward strand
Alignment:-------CATAGTCTAT
CANAGNNCAAAGTCCA-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G A C T G C A G C A T T C G A C A T G G C A T A G T C A G C T C T G A C G A T
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A A C G T

Hnf4a/MA0114.3/Jaspar

Match Rank:7
Score:0.55
Offset:-5
Orientation:forward strand
Alignment:-----CATAGTCTAT-
GGGGTCAAAGTCCAAT
 A C G T A C G T A C G T A C G T A C G T T G A C T G C A G C A T T C G A C A T G G C A T A G T C A G C T C T G A C G A T A C G T
T C A G T C A G C T A G C A T G C A G T A G T C T C G A C T G A C T G A A C T G A C G T A G T C A G T C C T G A T C G A G A C T

Sox17/MA0078.1/Jaspar

Match Rank:8
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--CATAGTCTAT
CTCATTGTC---
 A C G T A C G T T G A C T G C A G C A T T C G A C A T G G C A T A G T C A G C T C T G A C G A T
G A C T G A C T G A T C C G T A A G C T A C G T A C T G A C G T A T G C A C G T A C G T A C G T

PAX7/MA0680.1/Jaspar

Match Rank:9
Score:0.54
Offset:2
Orientation:forward strand
Alignment:CATAGTCTAT--
--TAATCGATTA
 T G A C T G C A G C A T T C G A C A T G G C A T A G T C A G C T C T G A C G A T A C G T A C G T
A C G T A C G T C G A T T G C A G T C A G A C T A G T C T C A G C G T A C G A T G A C T G C T A

PAX3/MA0780.1/Jaspar

Match Rank:10
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:CATAGTCTAT--
--TAATCGATTA
 T G A C T G C A G C A T T C G A C A T G G C A T A G T C A G C T C T G A C G A T A C G T A C G T
A C G T A C G T C G A T C T G A T C G A G A C T A G T C T C A G T C G A C A G T A G C T G C T A