Information for 3-TCGGTTAACC (Motif 4)

A C G T A T G C C A T G A C T G A C G T A G C T T C G A G C T A A T G C G A T C
Reverse Opposite:
C T A G A T C G C A G T A G C T T C G A G T C A A G T C G T A C T A C G T G C A
p-value:1e-8
log p-value:-2.031e+01
Information Content per bp:1.721
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.45%
Number of Background Sequences with motif61.5
Percentage of Background Sequences with motif0.13%
Average Position of motif in Targets35.8 +/- 16.3bp
Average Position of motif in Background50.6 +/- 25.4bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0081.1_Tcf1_1/Jaspar

Match Rank:1
Score:0.78
Offset:-2
Orientation:forward strand
Alignment:--TCGGTTAACC-----
ACTTAGTTAACTAAAAA
 A C G T A C G T A C G T A T G C C A T G A C T G A C G T A G C T T C G A G C T A A T G C G A T C A C G T A C G T A C G T A C G T A C G T
T G C A G A T C A G C T G A C T T C G A C T A G G A C T C G A T G C T A C G T A A G T C G A C T C T G A T C G A C T G A G T C A C T G A

PH0167.1_Tcf1/Jaspar

Match Rank:2
Score:0.78
Offset:-3
Orientation:reverse strand
Alignment:---TCGGTTAACC----
NTTTTAGTTAACNNAGN
 A C G T A C G T A C G T A C G T A T G C C A T G A C T G A C G T A G C T T C G A G C T A A T G C G A T C A C G T A C G T A C G T A C G T
T G C A G A C T G C A T A C G T G A C T C T G A A T C G G C A T C G A T C G T A C T G A T A G C A G C T T C G A T G C A T A C G C T A G

PB0109.1_Bbx_2/Jaspar

Match Rank:3
Score:0.73
Offset:-3
Orientation:reverse strand
Alignment:---TCGGTTAACC----
NNNNCTGTTAACNNTNN
 A C G T A C G T A C G T A C G T A T G C C A T G A C T G A C G T A G C T T C G A G C T A A T G C G A T C A C G T A C G T A C G T A C G T
A G T C G A T C T G C A C G T A T A G C A G C T C A T G C A G T A G C T C T G A G T C A G A T C T C G A C T G A C G A T A G T C C T G A

PH0168.1_Hnf1b/Jaspar

Match Rank:4
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-TCGGTTAACC------
AGCTGTTAACTAGCCGT
 A C G T A C G T A T G C C A T G A C T G A C G T A G C T T C G A G C T A A T G C G A T C A C G T A C G T A C G T A C G T A C G T A C G T
C G T A A C T G A G T C A C G T C T A G G C A T G A C T C G T A G C T A A G T C A G C T C G T A T C A G A G T C G A T C A T C G A G C T

MYBL1/MA0776.1/Jaspar

Match Rank:5
Score:0.69
Offset:0
Orientation:forward strand
Alignment:TCGGTTAACC--
ACCGTTAACGGT
 A C G T A T G C C A T G A C T G A C G T A G C T T C G A G C T A A T G C G A T C A C G T A C G T
C T G A T G A C T A G C T C A G G A C T G C A T C G T A T C G A G T A C A T C G C A T G G A C T

HMBOX1/MA0895.1/Jaspar

Match Rank:6
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:TCGGTTAACC---
---GTTAACTAGN
 A C G T A T G C C A T G A C T G A C G T A G C T T C G A G C T A A T G C G A T C A C G T A C G T A C G T
A C G T A C G T A C G T A T C G C A G T G C A T C G T A G C T A T A G C G A C T G C T A T C A G A C G T

MF0009.1_TRP(MYB)_class/Jaspar

Match Rank:7
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--TCGGTTAACC
TGTCGGTT----
 A C G T A C G T A C G T A T G C C A T G A C T G A C G T A G C T T C G A G C T A A T G C G A T C
C G A T C A T G C G A T G A T C T C A G A T C G G C A T G C A T A C G T A C G T A C G T A C G T

PH0165.1_Six6_1/Jaspar

Match Rank:8
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--TCGGTTAACC-----
AATAGGGTATCAATTAT
 A C G T A C G T A C G T A T G C C A T G A C T G A C G T A G C T T C G A G C T A A T G C G A T C A C G T A C G T A C G T A C G T A C G T
C T G A G C T A C G A T T C G A T C A G A C T G T C A G A C G T C T G A A C G T G A T C C G T A G T C A C G A T G C A T G C T A A C G T

RORA(var.2)/MA0072.1/Jaspar

Match Rank:9
Score:0.58
Offset:-6
Orientation:forward strand
Alignment:------TCGGTTAACC
TATAAGTAGGTCAA--
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C C A T G A C T G A C G T A G C T T C G A G C T A A T G C G A T C
C G A T C G T A C G A T G T C A C G T A A T C G A C G T C T G A A C T G A C T G A C G T A G T C C G T A T C G A A C G T A C G T

Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer

Match Rank:10
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:TCGGTTAACC--
TATGTAAACANG
 A C G T A T G C C A T G A C T G A C G T A G C T T C G A G C T A A T G C G A T C A C G T A C G T
G C A T T C G A C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A C T G A T A C G