Information for 2-CTGCAGAGCT (Motif 2)

G A T C G C A T A T C G A G T C C T G A C T A G C G T A C A T G A G T C A C G T
Reverse Opposite:
T G C A T C A G G T A C G C A T G A T C G A C T T C A G T A G C C G T A C T A G
p-value:1e-11
log p-value:-2.696e+01
Information Content per bp:1.649
Number of Target Sequences with motif75.0
Percentage of Target Sequences with motif9.09%
Number of Background Sequences with motif1747.1
Percentage of Background Sequences with motif3.69%
Average Position of motif in Targets45.8 +/- 25.3bp
Average Position of motif in Background49.7 +/- 29.3bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0091.1_Zbtb3_1/Jaspar

Match Rank:1
Score:0.66
Offset:-4
Orientation:reverse strand
Alignment:----CTGCAGAGCT---
NNNANTGCAGTGCNNTT
 A C G T A C G T A C G T A C G T G A T C G C A T A T C G A G T C C T G A C T A G C G T A C A T G A G T C A C G T A C G T A C G T A C G T
T G A C T A C G T A C G T G C A T C G A A C G T T A C G G T A C C G T A A T C G A G C T C A T G T A G C T A C G T C G A G A C T G A C T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:2
Score:0.61
Offset:-6
Orientation:forward strand
Alignment:------CTGCAGAGCT
GGCCYCCTGCTGDGH-
 A C G T A C G T A C G T A C G T A C G T A C G T G A T C G C A T A T C G A G T C C T G A C T A G C G T A C A T G A G T C A C G T
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:3
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CTGCAGAGCT
CCTGCTGAGH-
 A C G T G A T C G C A T A T C G A G T C C T G A C T A G C G T A C A T G A G T C A C G T
A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:4
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----CTGCAGAGCT
CCCCCTGCTGTG--
 A C G T A C G T A C G T A C G T G A T C G C A T A T C G A G T C C T G A C T A G C G T A C A T G A G T C A C G T
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T A C G T

Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer

Match Rank:5
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:CTGCAGAGCT--
--GCAGTGATTT
 G A T C G C A T A T C G A G T C C T G A C T A G C G T A C A T G A G T C A C G T A C G T A C G T
A C G T A C G T C T A G A G T C G C T A A T C G C G A T A C T G T C G A A C G T A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:6
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----CTGCAGAGCT-
TNTCCTGCTGTGNNG
 A C G T A C G T A C G T A C G T G A T C G C A T A T C G A G T C C T G A C T A G C G T A C A T G A G T C A C G T A C G T
G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G

PB0207.1_Zic3_2/Jaspar

Match Rank:7
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----CTGCAGAGCT-
NNTCCTGCTGTGNNN
 A C G T A C G T A C G T A C G T G A T C G C A T A T C G A G T C C T G A C T A G C G T A C A T G A G T C A C G T A C G T
G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:8
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:CTGCAGAGCT
CTYRAGTGSY
 G A T C G C A T A T C G A G T C C T G A C T A G C G T A C A T G A G T C A C G T
A T G C G C A T A G C T C T A G C G T A A C T G C G A T C T A G A T G C G A T C

PB0206.1_Zic2_2/Jaspar

Match Rank:9
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----CTGCAGAGCT-
TCNCCTGCTGNGNNN
 A C G T A C G T A C G T A C G T G A T C G C A T A T C G A G T C C T G A C T A G C G T A C A T G A G T C A C G T A C G T
G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G

Gfi1b/MA0483.1/Jaspar

Match Rank:10
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:CTGCAGAGCT--
-TGCTGTGATTT
 G A T C G C A T A T C G A G T C C T G A C T A G C G T A C A T G A G T C A C G T A C G T A C G T
A C G T C G A T C T A G G A T C G C A T A T C G C G A T A C T G T C G A A G C T A C G T A C G T