Information for 6-TTGGTAAGATGCC (Motif 13)

A G C T A C G T A C T G A C T G A G C T G C T A C G T A A C T G G T C A C G A T A C T G A G T C A G T C
Reverse Opposite:
A C T G A C T G A G T C G C T A A C G T A G T C A C G T C G A T T C G A A G T C A G T C C G T A C T G A
p-value:1e-5
log p-value:-1.206e+01
Information Content per bp:1.908
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.61%
Number of Background Sequences with motif14.6
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets43.4 +/- 27.2bp
Average Position of motif in Background45.4 +/- 27.5bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:1
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:TTGGTAAGATGCC-
TTGGCATGGTGCCA
 A G C T A C G T A C T G A C T G A G C T G C T A C G T A A C T G G T C A C G A T A C T G A G T C A G T C A C G T
G A C T A C G T A C T G A C T G A G T C C G T A G A C T A T C G A T C G C A G T A C T G A G T C A G T C C G T A

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:TTGGTAAGATGCC---
TTGGCANNNTGCCAAG
 A G C T A C G T A C T G A C T G A G C T G C T A C G T A A C T G G T C A C G A T A C T G A G T C A G T C A C G T A C G T A C G T
G A C T C A G T A C T G C T A G T G A C G C T A T A G C C G T A T A C G C G A T A C T G G A T C G T A C G T C A C T G A T C A G

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:3
Score:0.67
Offset:0
Orientation:forward strand
Alignment:TTGGTAAGATGCC-
CTGGCAGNCTGCCA
 A G C T A C G T A C T G A C T G A G C T G C T A C G T A A C T G G T C A C G A T A C T G A G T C A G T C A C G T
A G T C C G A T A C T G A T C G T G A C G C T A C A T G A T C G T G A C C G A T A C T G T A G C G T A C G T C A

PROX1/MA0794.1/Jaspar

Match Rank:4
Score:0.55
Offset:4
Orientation:forward strand
Alignment:TTGGTAAGATGCC---
----CAAGACGCCTTA
 A G C T A C G T A C T G A C T G A G C T G C T A C G T A A C T G G T C A C G A T A C T G A G T C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A G T C C T G A G C T A C T A G T C G A G A T C C A T G G A T C A G T C C A G T A G C T T C G A

YY1/MA0095.2/Jaspar

Match Rank:5
Score:0.55
Offset:4
Orientation:forward strand
Alignment:TTGGTAAGATGCC---
----CAAGATGGCGGC
 A G C T A C G T A C T G A C T G A G C T G C T A C G T A A C T G G T C A C G A T A C T G A G T C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T G A C C T G A T C G A T C A G C G T A A G C T C T A G C T A G G T A C A C T G T C A G G T A C

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:6
Score:0.54
Offset:0
Orientation:forward strand
Alignment:TTGGTAAGATGCC
CAGGTAAGTAT--
 A G C T A C G T A C T G A C T G A G C T G C T A C G T A A C T G G T C A C G A T A C T G A G T C A G T C
T G A C C G T A C T A G A C T G A C G T C T G A C G T A C T A G C G A T C T G A G A C T A C G T A C G T

PB0022.1_Gata5_1/Jaspar

Match Rank:7
Score:0.53
Offset:-4
Orientation:forward strand
Alignment:----TTGGTAAGATGCC
TAAACTGATAAGAAGAT
 A C G T A C G T A C G T A C G T A G C T A C G T A C T G A C T G A G C T G C T A C G T A A C T G G T C A C G A T A C T G A G T C A G T C
G C A T C G T A C G T A C T G A A G T C G C A T A C T G C G T A C G A T G C T A C G T A T A C G T C G A T C G A C A T G C G T A C A G T

HIC2/MA0738.1/Jaspar

Match Rank:8
Score:0.53
Offset:8
Orientation:forward strand
Alignment:TTGGTAAGATGCC----
--------ATGCCCACC
 A G C T A C G T A C T G A C T G A G C T G C T A C G T A A C T G G T C A C G A T A C T G A G T C A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A A G C T T C A G T G A C G T A C G T A C T C G A T A G C A G T C

YY1(Zf)/Promoter/Homer

Match Rank:9
Score:0.53
Offset:4
Orientation:forward strand
Alignment:TTGGTAAGATGCC---
----CAAGATGGCGGC
 A G C T A C G T A C T G A C T G A G C T G C T A C G T A A C T G G T C A C G A T A C T G A G T C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T A G C C G T A C T G A T A C G C G T A A C G T A C T G A C T G A G T C T A C G C T A G G T A C

NFIA/MA0670.1/Jaspar

Match Rank:10
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--TTGGTAAGATGCC
NNTTGGCANN-----
 A C G T A C G T A G C T A C G T A C T G A C T G A G C T G C T A C G T A A C T G G T C A C G A T A C T G A G T C A G T C
G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T A C G T A C G T A C G T A C G T