Information for 19-CCTGACCTGACYA (Motif 38)

A G T C A G T C A G C T A C T G C T G A T A G C A G T C A C G T A C T G C T G A A G T C A G T C C G T A
Reverse Opposite:
A C G T C T A G C T A G A G C T A G T C C G T A A C T G A C T G A G C T A G T C C T G A A C T G C T A G
p-value:1e-7
log p-value:-1.827e+01
Information Content per bp:1.835
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.77%
Number of Background Sequences with motif9.7
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets49.5 +/- 21.1bp
Average Position of motif in Background39.6 +/- 22.9bp
Strand Bias (log2 ratio + to - strand density)2.8
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer

Match Rank:1
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---CCTGACCTGACYA
TGWCCTCARNTGACC-
 A C G T A C G T A C G T A G T C A G T C A G C T A C T G C T G A T A G C A G T C A C G T A C T G C T G A A G T C A G T C C G T A
G C A T T A C G C G T A G T A C A G T C G A C T A G T C T C G A T C A G T C G A C G A T T C A G T G C A G T A C G A T C A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:2
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:CCTGACCTGACYA
--TGACCTYA---
 A G T C A G T C A G C T A C T G C T G A T A G C A G T C A C G T A C T G C T G A A G T C A G T C C G T A
A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T A C G T A C G T

ZEB1/MA0103.2/Jaspar

Match Rank:3
Score:0.63
Offset:0
Orientation:forward strand
Alignment:CCTGACCTGACYA
CCTCACCTG----
 A G T C A G T C A G C T A C T G C T G A T A G C A G T C A C G T A C T G C T G A A G T C A G T C C G T A
T G A C A G T C C G A T A G T C C G T A A G T C A G T C A C G T A C T G A C G T A C G T A C G T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:4
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:CCTGACCTGACYA
--TGACCT-----
 A G T C A G T C A G C T A C T G C T G A T A G C A G T C A C G T A C T G C T G A A G T C A G T C C G T A
A C G T A C G T A C G T C A T G G C T A G T A C G T A C G A C T A C G T A C G T A C G T A C G T A C G T

SREBF2/MA0596.1/Jaspar

Match Rank:5
Score:0.57
Offset:1
Orientation:forward strand
Alignment:CCTGACCTGACYA
-ATGGGGTGAT--
 A G T C A G T C A G C T A C T G C T G A T A G C A G T C A C G T A C T G C T G A A G T C A G T C C G T A
A C G T T C G A A C G T A T C G C T A G A T C G T A C G A C G T A C T G C G T A A G C T A C G T A C G T

PB0153.1_Nr2f2_2/Jaspar

Match Rank:6
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--CCTGACCTGACYA-
NNNNTGACCCGGCGCG
 A C G T A C G T A G T C A G T C A G C T A C T G C T G A T A G C A G T C A C G T A C T G C T G A A G T C A G T C C G T A A C G T
C G A T T C G A T A G C A T C G A G C T T C A G G T C A G T A C G T A C A G T C T A C G T C A G G T A C A C T G G T A C A C T G

NR4A2/MA0160.1/Jaspar

Match Rank:7
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:CCTGACCTGACYA
-GTGACCTT----
 A G T C A G T C A G C T A C T G C T G A T A G C A G T C A C G T A C T G C T G A A G T C A G T C C G T A
A C G T A C T G A C G T C T A G C G T A A G T C G T A C A G C T A G C T A C G T A C G T A C G T A C G T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:8
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----CCTGACCTGACYA
TGACCTTGACCT-----
 A C G T A C G T A C G T A C G T A G T C A G T C A G C T A C T G C T G A T A G C A G T C A C G T A C T G C T G A A G T C A G T C C G T A
G A C T T A C G G C T A T G A C A G T C A G C T A C G T C T A G T C G A G T A C G T A C A G C T A C G T A C G T A C G T A C G T A C G T

PB0157.1_Rara_2/Jaspar

Match Rank:9
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--CCTGACCTGACYA-
NNCNTGACCCCGCTCT
 A C G T A C G T A G T C A G T C A G C T A C T G C T G A T A G C A G T C A C G T A C T G C T G A A G T C A G T C C G T A A C G T
A C G T T G C A T G A C C A G T G A C T T C A G C G T A G T A C G T A C A T G C T A G C T C A G G T A C C A G T G T A C C A G T

RORA/MA0071.1/Jaspar

Match Rank:10
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:CCTGACCTGACYA
--TGACCTTGAT-
 A G T C A G T C A G C T A C T G C T G A T A G C A G T C A C G T A C T G C T G A A G T C A G T C C G T A
A C G T A C G T A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T A C G T