Information for 13-RTRTGKTGSATGTKTG (Motif 24)

C T G A A C G T C T A G A C G T C T A G A C G T C G A T A C T G A T G C C T G A G A C T A C T G C G A T A C T G A C G T A C T G
Reverse Opposite:
A G T C C G T A G T A C C G T A A G T C C G T A A G C T T A C G A G T C C G T A G T C A A G T C G T C A A G T C T G C A A G C T
p-value:1e-9
log p-value:-2.197e+01
Information Content per bp:1.858
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.64%
Number of Background Sequences with motif2.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets37.8 +/- 26.8bp
Average Position of motif in Background14.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:1
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:RTRTGKTGSATGTKTG
--ATGATKGATGRC--
 C T G A A C G T C T A G A C G T C T A G A C G T C G A T A C T G A T G C C T G A G A C T A C T G C G A T A C T G A C G T A C T G
A C G T A C G T C T G A C G A T A T C G C G T A C G A T C A G T C T A G C G T A C G A T A C T G C T G A A T G C A C G T A C G T

PB0130.1_Gm397_2/Jaspar

Match Rank:2
Score:0.55
Offset:5
Orientation:reverse strand
Alignment:RTRTGKTGSATGTKTG-----
-----NNGCGTGTGTGCNGCN
 C T G A A C G T C T A G A C G T C T A G A C G T C G A T A C T G A T G C C T G A G A C T A C T G C G A T A C T G A C G T A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C A G T A C G T C T A G T G A C C A T G A C G T T A C G A G C T C A T G A G C T A C T G A G T C A G T C C A T G A G T C G A C T

CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer

Match Rank:3
Score:0.54
Offset:1
Orientation:forward strand
Alignment:RTRTGKTGSATGTKTG
-NATGTTGCAA-----
 C T G A A C G T C T A G A C G T C T A G A C G T C G A T A C T G A T G C C T G A G A C T A C T G C G A T A C T G A C G T A C T G
A C G T C T A G T C G A C G A T C T A G G C A T C A G T C T A G G A T C C G T A G T C A A C G T A C G T A C G T A C G T A C G T

PH0134.1_Pbx1/Jaspar

Match Rank:4
Score:0.50
Offset:0
Orientation:reverse strand
Alignment:RTRTGKTGSATGTKTG-
NNNNNATTGATGNGTGN
 C T G A A C G T C T A G A C G T C T A G A C G T C G A T A C T G A T G C C T G A G A C T A C T G C G A T A C T G A C G T A C T G A C G T
A C G T A C T G G C A T C G A T C A G T G C T A C G A T A C G T A C T G C G T A G A C T A C T G C A T G C T A G G C A T T C A G C T G A

OLIG3/MA0827.1/Jaspar

Match Rank:5
Score:0.50
Offset:-3
Orientation:reverse strand
Alignment:---RTRTGKTGSATGTKTG
ANCATATGGT---------
 A C G T A C G T A C G T C T G A A C G T C T A G A C G T C T A G A C G T C G A T A C T G A T G C C T G A G A C T A C T G C G A T A C T G A C G T A C T G
C T G A T G C A G T A C C T G A A C G T T G C A G A C T C A T G A C T G A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

TBX1/MA0805.1/Jaspar

Match Rank:6
Score:0.50
Offset:9
Orientation:forward strand
Alignment:RTRTGKTGSATGTKTG-
---------AGGTGTGA
 C T G A A C G T C T A G A C G T C T A G A C G T C G A T A C T G A T G C C T G A G A C T A C T G C G A T A C T G A C G T A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A T C A G A C T G A G C T A T C G G A C T A C T G T G C A

OLIG2/MA0678.1/Jaspar

Match Rank:7
Score:0.50
Offset:-3
Orientation:reverse strand
Alignment:---RTRTGKTGSATGTKTG
ACCATATGGT---------
 A C G T A C G T A C G T C T G A A C G T C T A G A C G T C T A G A C G T C G A T A C T G A T G C C T G A G A C T A C T G C G A T A C T G A C G T A C T G
C T G A T G A C G T A C C T G A A C G T C G T A G A C T A C T G A C T G G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0178.1_Sox8_2/Jaspar

Match Rank:8
Score:0.50
Offset:-1
Orientation:reverse strand
Alignment:-RTRTGKTGSATGTKTG
NNTNTCATGAATGT---
 A C G T C T G A A C G T C T A G A C G T C T A G A C G T C G A T A C T G A T G C C T G A G A C T A C T G C G A T A C T G A C G T A C T G
A T G C T A C G C A G T A C T G C G A T G A T C T G C A A G C T C T A G C G T A T C G A C G A T C T A G G A C T A C G T A C G T A C G T

OLIG1/MA0826.1/Jaspar

Match Rank:9
Score:0.49
Offset:-3
Orientation:reverse strand
Alignment:---RTRTGKTGSATGTKTG
AACATATGTT---------
 A C G T A C G T A C G T C T G A A C G T C T A G A C G T C T A G A C G T C G A T A C T G A T G C C T G A G A C T A C T G C G A T A C T G A C G T A C T G
C T G A T G C A G T A C C G T A A C G T T G C A G A C T A C T G A C G T A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

TBX15/MA0803.1/Jaspar

Match Rank:10
Score:0.49
Offset:9
Orientation:forward strand
Alignment:RTRTGKTGSATGTKTG-
---------AGGTGTGA
 C T G A A C G T C T A G A C G T C T A G A C G T C G A T A C T G A T G C C T G A G A C T A C T G C G A T A C T G A C G T A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A C T A G T C A G A C G T A T C G A G C T A C T G C T G A