Information for 11-GAGCCAGGCTTACTAC (Motif 18)

A T C G C G T A A C T G G T A C A G T C C G T A A C T G T A C G A G T C A C G T A C G T G T C A A G T C C G A T C G T A T A G C
Reverse Opposite:
A T C G G C A T G C T A C T A G A C G T T C G A T C G A T C A G A T G C A G T C C G A T A C T G A C T G A G T C C G A T A T G C
p-value:1e-9
log p-value:-2.256e+01
Information Content per bp:1.700
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.67%
Number of Background Sequences with motif67.9
Percentage of Background Sequences with motif0.14%
Average Position of motif in Targets44.3 +/- 27.3bp
Average Position of motif in Background50.3 +/- 28.5bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIX/MA0671.1/Jaspar

Match Rank:1
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-GAGCCAGGCTTACTAC
CGTGCCAAG--------
 A C G T A T C G C G T A A C T G G T A C A G T C C G T A A C T G T A C G A G T C A C G T A C G T G T C A A G T C C G A T C G T A T A G C
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:2
Score:0.53
Offset:0
Orientation:forward strand
Alignment:GAGCCAGGCTTACTAC
CAGCC-----------
 A T C G C G T A A C T G G T A C A G T C C G T A A C T G T A C G A G T C A C G T A C G T G T C A A G T C C G A T C G T A T A G C
T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--GAGCCAGGCTTACTAC
AGGTGHCAGACA------
 A C G T A C G T A T C G C G T A A C T G G T A C A G T C C G T A A C T G T A C G A G T C A C G T A C G T G T C A A G T C C G A T C G T A T A G C
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T

ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:4
Score:0.52
Offset:-12
Orientation:forward strand
Alignment:------------GAGCCAGGCTTACTAC
GAGCCTGGTACTGWGCCTGR--------
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T C G C G T A A C T G G T A C A G T C C G T A A C T G T A C G A G T C A C G T A C G T G T C A A G T C C G A T C G T A T A G C
T A C G C T G A C A T G G A T C G T A C G C A T T C A G T A C G A G C T G T C A G A T C G C A T T A C G C G T A C T A G G A T C G A T C C G A T A C T G T C A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:5
Score:0.52
Offset:-2
Orientation:reverse strand
Alignment:--GAGCCAGGCTTACTAC
AGGTGNCAGACAG-----
 A C G T A C G T A T C G C G T A A C T G G T A C A G T C C G T A A C T G T A C G A G T C A C G T A C G T G T C A A G T C C G A T C G T A T A G C
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G A C G T A C G T A C G T A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:6
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:GAGCCAGGCTTACTAC
ATGCCAGACN------
 A T C G C G T A A C T G G T A C A G T C C G T A A C T G T A C G A G T C A C G T A C G T G T C A A G T C C G A T C G T A T A G C
C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T A C G T A C G T A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:7
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:GAGCCAGGCTTACTAC
-TGCCAA---------
 A T C G C G T A A C T G G T A C A G T C C G T A A C T G T A C G A G T C A C G T A C G T G T C A A G T C C G A T C G T A T A G C
A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

POL013.1_MED-1/Jaspar

Match Rank:8
Score:0.50
Offset:-2
Orientation:reverse strand
Alignment:--GAGCCAGGCTTACTAC
CGGAGC------------
 A C G T A C G T A T C G C G T A A C T G G T A C A G T C C G T A A C T G T A C G A G T C A C G T A C G T G T C A A G T C C G A T C G T A T A G C
A T G C A C T G A C T G C G T A A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer

Match Rank:9
Score:0.50
Offset:1
Orientation:reverse strand
Alignment:GAGCCAGGCTTACTAC
-TGCCTGCGYCMCCTT
 A T C G C G T A A C T G G T A C A G T C C G T A A C T G T A C G A G T C A C G T A C G T G T C A A G T C C G A T C G T A T A G C
A C G T C A G T A C T G A G T C A G T C A C G T A C T G A T G C C T A G A G T C G A T C G T C A A G T C A G T C G C A T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:10
Score:0.49
Offset:-1
Orientation:reverse strand
Alignment:-GAGCCAGGCTTACTAC
BCAGACWA---------
 A C G T A T C G C G T A A C T G G T A C A G T C C G T A A C T G T A C G A G T C A C G T A C G T G T C A A G T C C G A T C G T A T A G C
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T