Information for 9-GCCCCTAACCAGGACA (Motif 16)

A C T G A G T C A G T C G A T C A G T C C G A T G T C A C G T A A T G C G T A C C G T A A C T G T A C G G T C A A G T C C G T A
Reverse Opposite:
A C G T C T A G A C G T A T G C A G T C A C G T A C T G A T C G A C G T A C G T C G T A A C T G C T A G C T A G C T A G G T A C
p-value:1e-11
log p-value:-2.542e+01
Information Content per bp:1.786
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.64%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets50.6 +/- 26.2bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0205.1_Zic1_2/Jaspar

Match Rank:1
Score:0.56
Offset:1
Orientation:forward strand
Alignment:GCCCCTAACCAGGACA
-CCACACAGCAGGAGA
 A C T G A G T C A G T C G A T C A G T C C G A T G T C A C G T A A T G C G T A C C G T A A C T G T A C G G T C A A G T C C G T A
A C G T A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer

Match Rank:2
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--GCCCCTAACCAGGACA
AGGTCTCTAACC------
 A C G T A C G T A C T G A G T C A G T C G A T C A G T C C G A T G T C A C G T A A T G C G T A C C G T A A C T G T A C G G T C A A G T C C G T A
C T G A T C A G A C T G C A G T A G T C G A C T A G T C A C G T C G T A G C T A A T G C G A T C A C G T A C G T A C G T A C G T A C G T A C G T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:3
Score:0.55
Offset:8
Orientation:forward strand
Alignment:GCCCCTAACCAGGACA--
--------CAAGGHCANV
 A C T G A G T C A G T C G A T C A G T C C G A T G T C A C G T A A T G C G T A C C G T A A C T G T A C G G T C A A G T C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G

PH0040.1_Hmbox1/Jaspar

Match Rank:4
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:GCCCCTAACCAGGACA-
GANGTTAACTAGTTTNN
 A C T G A G T C A G T C G A T C A G T C C G A T G T C A C G T A A T G C G T A C C G T A A C T G T A C G G T C A A G T C C G T A A C G T
T A C G G C T A G C A T T C A G G C A T G C A T C G T A G T C A A G T C A G C T G T C A T C A G G C A T G A C T G A C T C G A T A G T C

PB0206.1_Zic2_2/Jaspar

Match Rank:5
Score:0.53
Offset:1
Orientation:forward strand
Alignment:GCCCCTAACCAGGACA
-CCACACAGCAGGAGA
 A C T G A G T C A G T C G A T C A G T C C G A T G T C A C G T A A T G C G T A C C G T A A C T G T A C G G T C A A G T C C G T A
A C G T G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

PB0159.1_Rfx4_2/Jaspar

Match Rank:6
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:GCCCCTAACCAGGACA
-NNNGTAACTANGNNA
 A C T G A G T C A G T C G A T C A G T C C G A T G T C A C G T A A T G C G T A C C G T A A C T G T A C G G T C A A G T C C G T A
A C G T A C G T A T G C A T C G A C T G G A C T G T C A C G T A G T A C A G C T G C T A C A T G A T C G T A C G C A G T C G T A

Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer

Match Rank:7
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:GCCCCTAACCAGGACA
-TCCCAGMCRAGCCCC
 A C T G A G T C A G T C G A T C A G T C C G A T G T C A C G T A A T G C G T A C C G T A A C T G T A C G G T C A A G T C C G T A
A C G T A G C T A G T C A G T C A G T C C T G A T C A G T G C A G A T C T C G A C G T A A C T G A T G C G T A C G T A C G A T C

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:8
Score:0.52
Offset:4
Orientation:forward strand
Alignment:GCCCCTAACCAGGACA
----CACAGCAGGGGG
 A C T G A G T C A G T C G A T C A G T C C G A T G T C A C G T A A T G C G T A C C G T A A C T G T A C G G T C A A G T C C G T A
A C G T A C G T A C G T A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

HMBOX1/MA0895.1/Jaspar

Match Rank:9
Score:0.51
Offset:3
Orientation:reverse strand
Alignment:GCCCCTAACCAGGACA
---GTTAACTAGN---
 A C T G A G T C A G T C G A T C A G T C C G A T G T C A C G T A A T G C G T A C C G T A A C T G T A C G G T C A A G T C C G T A
A C G T A C G T A C G T A T C G C A G T G C A T C G T A G C T A T A G C G A C T G C T A T C A G A C G T A C G T A C G T A C G T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:10
Score:0.51
Offset:6
Orientation:forward strand
Alignment:GCCCCTAACCAGGACA
------AAYTAGGTCA
 A C T G A G T C A G T C G A T C A G T C C G A T G T C A C G T A A T G C G T A C C G T A A C T G T A C G G T C A A G T C C G T A
A C G T A C G T A C G T A C G T A C G T A C G T G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A