Information for 2-GCAGGTGCAGTSM (Motif 5)

A T C G G T A C C G T A A C T G T A C G A G C T A C T G G T A C C G T A A C T G C G A T T A G C G T A C
Reverse Opposite:
C A T G A T C G C G T A G T A C G C A T A C T G A G T C C T G A A T G C G T A C C G A T A C T G A T G C
p-value:1e-12
log p-value:-2.873e+01
Information Content per bp:1.733
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif3.34%
Number of Background Sequences with motif158.8
Percentage of Background Sequences with motif0.37%
Average Position of motif in Targets45.9 +/- 27.8bp
Average Position of motif in Background51.0 +/- 42.4bp
Strand Bias (log2 ratio + to - strand density)-1.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:1
Score:0.81
Offset:-2
Orientation:reverse strand
Alignment:--GCAGGTGCAGTSM
SDGCAGGTGCNS---
 A C G T A C G T A T C G G T A C C G T A A C T G T A C G A G C T A C T G G T A C C G T A A C T G C G A T T A G C G T A C
A T C G C T A G C T A G A G T C C G T A A C T G A C T G A C G T A C T G A T G C G A T C A T G C A C G T A C G T A C G T

TCF4/MA0830.1/Jaspar

Match Rank:2
Score:0.77
Offset:-1
Orientation:reverse strand
Alignment:-GCAGGTGCAGTSM
NNCAGGTGCG----
 A C G T A T C G G T A C C G T A A C T G T A C G A G C T A C T G G T A C C G T A A C T G C G A T T A G C G T A C
G C T A T A C G G A T C C G T A A T C G T A C G A C G T C T A G A G T C C T A G A C G T A C G T A C G T A C G T

TCF3/MA0522.2/Jaspar

Match Rank:3
Score:0.76
Offset:-1
Orientation:reverse strand
Alignment:-GCAGGTGCAGTSM
NNCAGGTGTN----
 A C G T A T C G G T A C C G T A A C T G T A C G A G C T A C T G G T A C C G T A A C T G C G A T T A G C G T A C
G T C A T C A G A G T C C G T A A T C G T A C G C G A T A C T G A G C T C A G T A C G T A C G T A C G T A C G T

ID4/MA0824.1/Jaspar

Match Rank:4
Score:0.76
Offset:-1
Orientation:reverse strand
Alignment:-GCAGGTGCAGTSM
GACAGGTGTN----
 A C G T A T C G G T A C C G T A A C T G T A C G A G C T A C T G G T A C C G T A A C T G C G A T T A G C G T A C
C T A G T C G A A G T C C G T A A T C G A T C G A G C T A C T G A G C T G T C A A C G T A C G T A C G T A C G T

PB0089.1_Tcfe2a_1/Jaspar

Match Rank:5
Score:0.75
Offset:-4
Orientation:forward strand
Alignment:----GCAGGTGCAGTSM
ATCCACAGGTGCGAAAA
 A C G T A C G T A C G T A C G T A T C G G T A C C G T A A C T G T A C G A G C T A C T G G T A C C G T A A C T G C G A T T A G C G T A C
T C G A A C G T G T A C G T A C T G C A G T A C G T C A A T C G T A C G A G C T A C T G A G T C C T A G T C G A C G T A G T C A C G T A

E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:6
Score:0.74
Offset:-1
Orientation:reverse strand
Alignment:-GCAGGTGCAGTSM
NNCAGGTGNN----
 A C G T A T C G G T A C C G T A A C T G T A C G A G C T A C T G G T A C C G T A A C T G C G A T T A G C G T A C
C A G T T A C G A G T C C G T A A C T G A C T G A C G T A C T G A C G T T A C G A C G T A C G T A C G T A C G T

SNAI2/MA0745.1/Jaspar

Match Rank:7
Score:0.73
Offset:-1
Orientation:forward strand
Alignment:-GCAGGTGCAGTSM
AACAGGTGT-----
 A C G T A T C G G T A C C G T A A C T G T A C G A G C T A C T G G T A C C G T A A C T G C G A T T A G C G T A C
C T G A C T G A G T A C G C T A C T A G C T A G G A C T C A T G A G C T A C G T A C G T A C G T A C G T A C G T

NHLH1/MA0048.2/Jaspar

Match Rank:8
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-GCAGGTGCAGTSM
CGCAGCTGCG----
 A C G T A T C G G T A C C G T A A C T G T A C G A G C T A C T G G T A C C G T A A C T G C G A T T A G C G T A C
T G A C C T A G A T G C T C G A A T C G T A G C A C G T A C T G A G T C A C T G A C G T A C G T A C G T A C G T

PB0003.1_Ascl2_1/Jaspar

Match Rank:9
Score:0.69
Offset:-5
Orientation:reverse strand
Alignment:-----GCAGGTGCAGTSM
NNNNAGCAGCTGCTGAN-
 A C G T A C G T A C G T A C G T A C G T A T C G G T A C C G T A A C T G T A C G A G C T A C T G G T A C C G T A A C T G C G A T T A G C G T A C
G T A C C G T A C T A G A C G T T C G A T C A G A G T C C G T A A T C G T A G C C G A T A C T G A G T C A G C T T C A G T G C A T C A G A C G T

Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer

Match Rank:10
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---GCAGGTGCAGTSM
NNVVCAGCTGBN----
 A C G T A C G T A C G T A T C G G T A C C G T A A C T G T A C G A G C T A C T G G T A C C G T A A C T G C G A T T A G C G T A C
C T A G A G T C T A C G T A C G T G A C C G T A A C T G T A G C G C A T C A T G A T G C A G C T A C G T A C G T A C G T A C G T