Information for 6-CAATGTCCTT (Motif 28)

A G T C G T C A T G C A C G A T C T A G A G C T T A G C G A T C G A C T G C A T
Reverse Opposite:
C G T A C T G A C T A G A T C G T C G A G A T C C G T A A C G T C A G T C T A G
p-value:1e-7
log p-value:-1.811e+01
Information Content per bp:1.623
Number of Target Sequences with motif68.0
Percentage of Target Sequences with motif11.35%
Number of Background Sequences with motif2319.0
Percentage of Background Sequences with motif5.45%
Average Position of motif in Targets51.6 +/- 27.4bp
Average Position of motif in Background50.6 +/- 34.6bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer

Match Rank:1
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----CAATGTCCTT
AGGTCANTGACCTN
 A C G T A C G T A C G T A C G T A G T C G T C A T G C A C G A T C T A G A G C T T A G C G A T C G A C T G C A T
T C G A C A T G C A T G A C G T A T G C T C G A C T G A A G C T T A C G T G C A G T A C G A T C A G C T A G T C

Sox17/MA0078.1/Jaspar

Match Rank:2
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--CAATGTCCTT
GACAATGNN---
 A C G T A C G T A G T C G T C A T G C A C G A T C T A G A G C T T A G C G A T C G A C T G C A T
T A C G G T C A A G T C C G T A C T G A C G A T C T A G C G T A C T A G A C G T A C G T A C G T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:3
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:CAATGTCCTT-
-BNTGDCCTTG
 A G T C G T C A T G C A C G A T C T A G A G C T T A G C G A T C G A C T G C A T A C G T
A C G T A T G C C A T G A C G T C T A G C T G A T G A C T G A C G A C T G C A T A C T G

Sox6/MA0515.1/Jaspar

Match Rank:4
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-CAATGTCCTT
CCATTGTTTT-
 A C G T A G T C G T C A T G C A C G A T C T A G A G C T T A G C G A T C G A C T G C A T
A G T C A G T C C G T A A C G T A C G T A C T G A C G T A G C T G A C T A G C T A C G T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:5
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----CAATGTCCTT
VRAACAATGG----
 A C G T A C G T A C G T A C G T A G T C G T C A T G C A C G A T C T A G A G C T T A G C G A T C G A C T G C A T
T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G A C G T A C G T A C G T A C G T

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:6
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CAATGTCCTT
AAGATATCCTT
 A C G T A G T C G T C A T G C A C G A T C T A G A G C T T A G C G A T C G A C T G C A T
G C T A G C T A T C A G C G T A A C G T C T G A C G A T A T G C G A T C G C A T A G C T

SOX9/MA0077.1/Jaspar

Match Rank:7
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---CAATGTCCTT
GAACAATGG----
 A C G T A C G T A C G T A G T C G T C A T G C A C G A T C T A G A G C T T A G C G A T C G A C T G C A T
C T A G C G T A G C T A A G T C G C T A G C T A C G A T C T A G T A C G A C G T A C G T A C G T A C G T

PB0091.1_Zbtb3_1/Jaspar

Match Rank:8
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----CAATGTCCTT--
AATCGCACTGCATTCCG
 A C G T A C G T A C G T A C G T A C G T A G T C G T C A T G C A C G A T C T A G A G C T T A G C G A T C G A C T G C A T A C G T A C G T
C T G A C T G A A C G T A T G C A T C G G T A C C T G A A T G C C G A T A C T G A T G C G T C A A G C T A C G T A T G C A T G C A C T G

Sox1/MA0870.1/Jaspar

Match Rank:9
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--CAATGTCCTT---
AACAATGNTATTGTT
 A C G T A C G T A G T C G T C A T G C A C G A T C T A G A G C T T A G C G A T C G A C T G C A T A C G T A C G T A C G T
T C G A C T G A A G T C C T G A G T C A A C G T T A C G A G C T G C A T C G T A A C G T C A G T A C T G C G A T A C G T

SOX10/MA0442.1/Jaspar

Match Rank:10
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-CAATGTCCTT
ACAAAG-----
 A C G T A G T C G T C A T G C A C G A T C T A G A G C T T A G C G A T C G A C T G C A T
G T C A A T G C C G T A T G C A C G T A C T A G A C G T A C G T A C G T A C G T A C G T