Information for 13-GGCGCTGHVTAGCACC (Motif 25)

A C T G C T A G G T A C T A C G A G T C A C G T A C T G G A C T T A C G A C G T C G T A C T A G G T A C C T G A A G T C A G T C
Reverse Opposite:
A C T G C T A G A G C T A C T G A G T C C G A T G T C A A G T C C G T A A G T C C G T A A C T G A T G C A C T G A G T C G T A C
p-value:1e-8
log p-value:-2.067e+01
Information Content per bp:1.759
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.83%
Number of Background Sequences with motif3.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets58.6 +/- 19.6bp
Average Position of motif in Background45.2 +/- 8.5bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL009.1_DCE_S_II/Jaspar

Match Rank:1
Score:0.58
Offset:3
Orientation:forward strand
Alignment:GGCGCTGHVTAGCACC
---GCTGTG-------
 A C T G C T A G G T A C T A C G A G T C A C G T A C T G G A C T T A C G A C G T C G T A C T A G G T A C C T G A A G T C A G T C
A C G T A C G T A C G T T A C G T A G C C A G T A T C G G A C T A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:2
Score:0.58
Offset:4
Orientation:forward strand
Alignment:GGCGCTGHVTAGCACC-
----CTGTCTGTCACCT
 A C T G C T A G G T A C T A C G A G T C A C G T A C T G G A C T T A C G A C G T C G T A C T A G G T A C C T G A A G T C A G T C A C G T
A C G T A C G T A C G T A C G T T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T

Rhox11/MA0629.1/Jaspar

Match Rank:3
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--GGCGCTGHVTAGCACC
AAGACGCTGTAAAGCGA-
 A C G T A C G T A C T G C T A G G T A C T A C G A G T C A C G T A C T G G A C T T A C G A C G T C G T A C T A G G T A C C T G A A G T C A G T C
C G T A T G C A C A T G T G C A G A T C C T A G T A G C C A G T C T A G G A C T C G T A G C T A G C T A C T A G T A G C T C A G G C T A A C G T

PH0157.1_Rhox11_1/Jaspar

Match Rank:4
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--GGCGCTGHVTAGCACC
AAGACGCTGTAAAGCGA-
 A C G T A C G T A C T G C T A G G T A C T A C G A G T C A C G T A C T G G A C T T A C G A C G T C G T A C T A G G T A C C T G A A G T C A G T C
C G T A T G C A C A T G T G C A G A T C C T A G T A G C C A G T C T A G G A C T C G T A G C T A G C T A C T A G T A G C T C A G G C T A A C G T

PH0158.1_Rhox11_2/Jaspar

Match Rank:5
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--GGCGCTGHVTAGCACC
AGGACGCTGTAAAGGGA-
 A C G T A C G T A C T G C T A G G T A C T A C G A G T C A C G T A C T G G A C T T A C G A C G T C G T A C T A G G T A C C T G A A G T C A G T C
C G T A T C A G C A T G G T C A G A T C C T A G T A G C C A G T C T A G G A C T G C T A C G T A G C T A C T A G T A C G T C A G G C T A A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.52
Offset:5
Orientation:reverse strand
Alignment:GGCGCTGHVTAGCACC-
-----TGTCTGDCACCT
 A C T G C T A G G T A C T A C G A G T C A C G T A C T G G A C T T A C G A C G T C G T A C T A G G T A C C T G A A G T C A G T C A C G T
A C G T A C G T A C G T A C G T A C G T G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

POL010.1_DCE_S_III/Jaspar

Match Rank:7
Score:0.51
Offset:2
Orientation:reverse strand
Alignment:GGCGCTGHVTAGCACC
--NGCTN---------
 A C T G C T A G G T A C T A C G A G T C A C G T A C T G G A C T T A C G A C G T C G T A C T A G G T A C C T G A A G T C A G T C
A C G T A C G T T A C G A C T G A G T C A C G T A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer

Match Rank:8
Score:0.49
Offset:2
Orientation:reverse strand
Alignment:GGCGCTGHVTAGCACC-
--GYCTGGYYTNTGTCA
 A C T G C T A G G T A C T A C G A G T C A C G T A C T G G A C T T A C G A C G T C G T A C T A G G T A C C T G A A G T C A G T C A C G T
A C G T A C G T A T C G A G C T A G T C A C G T A C T G A T C G A G C T G A C T G C A T A G C T G A C T T A C G A G C T G A T C G C T A

Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer

Match Rank:9
Score:0.49
Offset:1
Orientation:reverse strand
Alignment:GGCGCTGHVTAGCACC
-TCCCAGMCRAGCCCC
 A C T G C T A G G T A C T A C G A G T C A C G T A C T G G A C T T A C G A C G T C G T A C T A G G T A C C T G A A G T C A G T C
A C G T A G C T A G T C A G T C A G T C C T G A T C A G T G C A G A T C T C G A C G T A A C T G A T G C G T A C G T A C G A T C

PB0091.1_Zbtb3_1/Jaspar

Match Rank:10
Score:0.49
Offset:-3
Orientation:forward strand
Alignment:---GGCGCTGHVTAGCACC
AATCGCACTGCATTCCG--
 A C G T A C G T A C G T A C T G C T A G G T A C T A C G A G T C A C G T A C T G G A C T T A C G A C G T C G T A C T A G G T A C C T G A A G T C A G T C
C T G A C T G A A C G T A T G C A T C G G T A C C T G A A T G C C G A T A C T G A T G C G T C A A G C T A C G T A T G C A T G C A C T G A C G T A C G T