Information for 12-GKGCACAGAGGGAGTG (Motif 20)

A C T G A C G T C T A G G T A C T C G A A G T C C T G A T C A G C T G A C A T G A C T G A C T G C G T A A T C G G C A T A C T G
Reverse Opposite:
A G T C C G T A A T G C C G A T A G T C A G T C G A T C G A C T A G T C A G C T A C T G A G C T A C T G A G T C T G C A A G T C
p-value:1e-10
log p-value:-2.487e+01
Information Content per bp:1.710
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.17%
Number of Background Sequences with motif7.7
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets74.3 +/- 13.0bp
Average Position of motif in Background35.5 +/- 15.1bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0207.1_Zic3_2/Jaspar

Match Rank:1
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GKGCACAGAGGGAGTG
GAGCACAGCAGGACA-
 A C T G A C G T C T A G G T A C T C G A A G T C C T G A T C A G C T G A C A T G A C T G A C T G C G T A A T C G G C A T A C T G
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:2
Score:0.58
Offset:0
Orientation:forward strand
Alignment:GKGCACAGAGGGAGTG
CCACACAGCAGGAGA-
 A C T G A C G T C T A G G T A C T C G A A G T C C T G A T C A G C T G A C A T G A C T G A C T G C G T A A T C G G C A T A C T G
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:3
Score:0.58
Offset:0
Orientation:forward strand
Alignment:GKGCACAGAGGGAGTG
CCACACAGCAGGAGA-
 A C T G A C G T C T A G G T A C T C G A A G T C C T G A T C A G C T G A C A T G A C T G A C T G C G T A A T C G G C A T A C T G
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:4
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:GKGCACAGAGGGAGTG-
--DCHCAGCAGGRGGCC
 A C T G A C G T C T A G G T A C T C G A A G T C C T G A T C A G C T G A C A T G A C T G A C T G C G T A A T C G G C A T A C T G A C G T
A C G T A C G T C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:5
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:GKGCACAGAGGGAGTG
--DCTCAGCAGG----
 A C T G A C G T C T A G G T A C T C G A A G T C C T G A T C A G C T G A C A T G A C T G A C T G C G T A A T C G G C A T A C T G
A C G T A C G T C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T A C G T A C G T

SP8/MA0747.1/Jaspar

Match Rank:6
Score:0.54
Offset:6
Orientation:reverse strand
Alignment:GKGCACAGAGGGAGTG--
------AGTGGGCGTGGC
 A C T G A C G T C T A G G T A C T C G A A G T C C T G A T C A G C T G A C A T G A C T G A C T G C G T A A T C G G C A T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T G A T C A G A C G T T C A G A T C G A T C G T G A C C A T G C A G T C A T G C A T G A G T C

PB0104.1_Zscan4_1/Jaspar

Match Rank:7
Score:0.54
Offset:-6
Orientation:reverse strand
Alignment:------GKGCACAGAGGGAGTG
NTNTATGTGCACATNNN-----
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C G T C T A G G T A C T C G A A G T C C T G A T C A G C T G A C A T G A C T G A C T G C G T A A T C G G C A T A C T G
C A G T G C A T C G A T C G A T C T G A C G A T T C A G A G C T C T A G A G T C C T G A A G T C G C T A G A C T A C T G C A G T G T C A A C G T A C G T A C G T A C G T A C G T

KLF16/MA0741.1/Jaspar

Match Rank:8
Score:0.54
Offset:7
Orientation:reverse strand
Alignment:GKGCACAGAGGGAGTG--
-------GGGGGCGTGGC
 A C T G A C G T C T A G G T A C T C G A A G T C C T G A T C A G C T G A C A T G A C T G A C T G C G T A A T C G G C A T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G C A T G C T A G A T C G A C T G G A T C C A T G A C G T C A T G C A T G A G T C

Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer

Match Rank:9
Score:0.53
Offset:6
Orientation:reverse strand
Alignment:GKGCACAGAGGGAGTG--
------RGTGGGYGTGGC
 A C T G A C G T C T A G G T A C T C G A A G T C C T G A T C A G C T G A C A T G A C T G A C T G C G T A A T C G G C A T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T G A T C A G C A G T C T A G A T C G A C T G G A T C C A T G A C G T C A T G A C T G A G T C

PB0026.1_Gm397_1/Jaspar

Match Rank:10
Score:0.53
Offset:-6
Orientation:reverse strand
Alignment:------GKGCACAGAGGGAGTG
NNGTATGTGCACATNNN-----
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C G T C T A G G T A C T C G A A G T C C T G A T C A G C T G A C A T G A C T G A C T G C G T A A T C G G C A T A C T G
C T G A G T A C C A T G C A G T T C G A C G A T T A C G A G C T C T A G A G T C C T G A A T G C G C T A G C A T G T A C C G A T C A T G A C G T A C G T A C G T A C G T A C G T